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基因型变异性增强了生态研究的可重复性。

Genotypic variability enhances the reproducibility of an ecological study.

机构信息

Ecotron (Unité Propre de Service 3248), Centre National de la Recherche Scientifique, Campus Baillarguet, Montferrier-sur-Lez, France.

Centre d'Ecologie Fonctionnelle et Evolutive, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5175, Université de Montpellier/Université Paul Valéry - École Pratique des Hautes Études, Montpellier, France.

出版信息

Nat Ecol Evol. 2018 Feb;2(2):279-287. doi: 10.1038/s41559-017-0434-x. Epub 2018 Jan 15.

DOI:10.1038/s41559-017-0434-x
PMID:29335575
Abstract

Many scientific disciplines are currently experiencing a 'reproducibility crisis' because numerous scientific findings cannot be repeated consistently. A novel but controversial hypothesis postulates that stringent levels of environmental and biotic standardization in experimental studies reduce reproducibility by amplifying the impacts of laboratory-specific environmental factors not accounted for in study designs. A corollary to this hypothesis is that a deliberate introduction of controlled systematic variability (CSV) in experimental designs may lead to increased reproducibility. To test this hypothesis, we had 14 European laboratories run a simple microcosm experiment using grass (Brachypodium distachyon L.) monocultures and grass and legume (Medicago truncatula Gaertn.) mixtures. Each laboratory introduced environmental and genotypic CSV within and among replicated microcosms established in either growth chambers (with stringent control of environmental conditions) or glasshouses (with more variable environmental conditions). The introduction of genotypic CSV led to 18% lower among-laboratory variability in growth chambers, indicating increased reproducibility, but had no significant effect in glasshouses where reproducibility was generally lower. Environmental CSV had little effect on reproducibility. Although there are multiple causes for the 'reproducibility crisis', deliberately including genetic variability may be a simple solution for increasing the reproducibility of ecological studies performed under stringently controlled environmental conditions.

摘要

目前,许多科学学科都面临着“可重复性危机”,因为许多科学发现无法得到一致的重复。一个新颖但有争议的假设认为,实验研究中严格的环境和生物标准化水平通过放大实验室特定环境因素的影响,而这些因素在研究设计中并未得到考虑,从而降低了可重复性。这个假设的一个推论是,在实验设计中故意引入受控的系统可变性(CSV)可能会导致可重复性提高。为了验证这个假设,我们让 14 个欧洲实验室使用草地(Brachypodium distachyon L.)单种培养物和草地与豆科植物(Medicago truncatula Gaertn.)混合物进行了一个简单的微宇宙实验。每个实验室在生长室(环境条件严格控制)或温室(环境条件更可变)中建立的重复微宇宙内和之间引入了环境和基因型 CSV。在生长室中引入基因型 CSV 导致了 18%的实验室间变异性降低,表明可重复性提高,但在可重复性通常较低的温室中没有显著影响。环境 CSV 对可重复性几乎没有影响。虽然“可重复性危机”有多种原因,但在严格控制环境条件下进行的生态研究中,故意包括遗传变异性可能是提高可重复性的一个简单解决方案。

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