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将现有药物重新用于新型 AMPK 激活剂作为延长寿命的策略:一项计算机辅助药物发现研究。

Repurposing existing drugs for new AMPK activators as a strategy to extend lifespan: a computer-aided drug discovery study.

机构信息

Department of Biology, Faculty of Science, Golestan University, Gorgan, Iran.

出版信息

Biogerontology. 2018 Apr;19(2):133-143. doi: 10.1007/s10522-018-9744-x. Epub 2018 Jan 15.

Abstract

Dietary restriction is one of the several ways which could putatively extend organisms' lifespan, ranging from Saccharomyces cerevisiae to rodents, by activating the AMP-activated protein kinase (AMPK), an ATP/AMP sensor. Extensive researches have shown that aging reduces sensibility of AMPK and eventually causes energy imbalance in cells. Research in mammals' AMPK depicts that this signaling molecule could control autophagy, improve cellular stress resistance and suppress inflammatory responses. Hence, in this study we performed a drug repurposing of 1908 FDA-approved drugs in order to discover putative safe activators of AMPK and to find new applications for existing drugs. For this purpose, FDA-approved drugs were screened by virtual screening and the ligand-protein interactions were carefully inspected. Moreover, through MM/PBSA analysis, the binding affinity of hit compounds in γ and αβ binding sites were investigated. As Cangrelor, Nacitentan, Levoleucovorin and Glisoxepide had lower binding affinities; we predicted that they would probably prove to be more potential activators than C2. However, hit-compounds in αβ binding site, exhibited higher unfavorable binding affinity. Hence, present findings can prove to be valuable for discovering new activators for AMPK.

摘要

饮食限制是延长生物体寿命的几种方法之一,从酿酒酵母到啮齿动物,通过激活 AMP 激活的蛋白激酶(AMPK),一种 ATP/AMP 传感器。大量研究表明,衰老会降低 AMPK 的敏感性,最终导致细胞能量失衡。哺乳动物 AMPK 的研究表明,这种信号分子可以控制自噬,提高细胞应激抗性并抑制炎症反应。因此,在这项研究中,我们对 1908 种已获 FDA 批准的药物进行了药物再利用,以发现潜在的 AMPK 安全激活剂,并为现有药物寻找新的应用。为此,通过虚拟筛选筛选了 FDA 批准的药物,并仔细检查了配体-蛋白相互作用。此外,通过 MM/PBSA 分析,研究了命中化合物在γ和αβ结合位点的结合亲和力。由于 Cangrelor、Nacitentan、左亚叶酸和 Glisoxepide 的结合亲和力较低;我们预测它们可能比 C2 更有可能成为潜在的激活剂。然而,αβ结合位点的命中化合物表现出更高的不利结合亲和力。因此,目前的研究结果可能有助于发现 AMPK 的新激活剂。

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