School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban 4001, South Africa.
Molecules. 2022 Jan 20;27(3):668. doi: 10.3390/molecules27030668.
: Despite the enormous efforts made towards combating tuberculosis (TB), the disease remains a major global threat. Hence, new drugs with novel mechanisms against TB are urgently needed. Fatty acid degradation protein D32 (FadD32) has been identified as a promising drug target against TB, the protein is required for the biosynthesis of mycolic acids, hence, essential for the growth and multiplication of the mycobacterium. However, the FadD32 mechanism upon the binding of FDA-approved drugs is not well established. Herein, we applied virtual screening (VS), molecular docking, and molecular dynamic (MD) simulation to identify potential FDA-approved drugs against FadD32. : VS technique was found promising to identify four FDA-approved drugs (accolate, sorafenib, mefloquine, and loperamide) with higher molecular docking scores, ranging from -8.0 to -10.0 kcal/mol. Post-MD analysis showed that the accolate hit displayed the highest total binding energy of -45.13 kcal/mol. Results also showed that the accolate hit formed more interactions with FadD32 active site residues and all active site residues displayed an increase in total binding contribution. RMSD, RMSF, Rg, and DCCM analysis further supported that the presence of accolate exhibited more structural stability, lower bimolecular flexibility, and more compactness into the FadD32 protein. : Our study revealed accolate as the best potential drug against FadD32, hence a prospective anti-TB drug in TB therapy. In addition, we believe that the approach presented in the current study will serve as a cornerstone to identifying new potential inhibitors against a wide range of biological targets.
尽管在防治结核病(TB)方面做出了巨大努力,但该疾病仍然是一个主要的全球威胁。因此,迫切需要具有新型作用机制的新型抗结核药物。脂肪酸降解蛋白 D32(FadD32)已被确定为一种有前途的抗结核药物靶点,该蛋白是合成分枝菌酸所必需的,因此对于分枝杆菌的生长和繁殖至关重要。然而,FDA 批准的药物结合 FadD32 的机制尚未得到很好的确定。在此,我们应用虚拟筛选(VS)、分子对接和分子动力学(MD)模拟来鉴定针对 FadD32 的潜在 FDA 批准药物。
VS 技术被发现是一种很有前途的方法,可以识别出四种具有较高分子对接分数的 FDA 批准药物(依托考昔、索拉非尼、甲氟喹和洛哌丁胺),范围在-8.0 到-10.0 kcal/mol 之间。MD 分析后显示,依托考昔命中物显示出最高的总结合能为-45.13 kcal/mol。结果还表明,依托考昔命中物与 FadD32 活性位点残基形成了更多的相互作用,并且所有活性位点残基的总结合贡献都增加了。RMSD、RMSF、Rg 和 DCCM 分析进一步支持了依托考昔的存在表现出更高的结构稳定性、更低的双分子灵活性和更紧凑的 FadD32 蛋白。
我们的研究表明依托考昔是针对 FadD32 的最佳潜在药物,因此是结核病治疗中一种有前景的抗结核药物。此外,我们相信当前研究中提出的方法将成为识别针对广泛生物靶点的新型潜在抑制剂的基石。