Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan 106, Republic of China.
Department of Physics, National Central University, Jhongli, Taiwan 320, Republic of China.
Phys Rev E. 2017 Sep;96(3-1):032610. doi: 10.1103/PhysRevE.96.032610. Epub 2017 Sep 26.
The unbinding dynamics of a nanosized sphere-and-cavity assembly under the pulling of constant force and constant loading rate is explored by dissipative particle dynamics simulations. The formation of this matched lock-and-key pair in a polymer solution is driven by the depletion attraction. The two-dimensional free energy landscape U(x,z) associated with this assembly is constructed. Our results indicate that the unbinding pathway along the orientation of the assembly is unfavorable due to the relatively high energy barrier compared to that along the tortuous minimum path whose energy barrier is not high. It is also found that the dissociation rate depends on the direction of the external force (θ) with respect to the assembly orientation. The presence of the force component perpendicular to the assembly orientation can reduce the bond lifetime significantly by driving the key particle to approach the minimum path. Moreover, the dissociation dynamics can be facilitated even by a pushing force compared to the spontaneous dissociation (without forces). To elucidate the effective pathway under pulling, the escaping position is analyzed and its mean direction with respect to the assembly orientation rises generally with increasing θ, revealing that the presence of the force component along the minimum pathway is helpful. The importance of the direction of the external pulling has been demonstrated in our simple system. Therefore, this effect should be considered in more complicated unbinding experiments.
通过耗散粒子动力学模拟研究了在恒力和恒加载速率下拉动时纳米球和腔组装体的解缚动力学。在聚合物溶液中,这种匹配的锁和键对的形成是由消耗吸引力驱动的。构建了与该组装体相关的二维自由能景观 U(x,z)。我们的结果表明,由于与沿曲折最小路径的能量势垒相比,沿组装体方向的解缚途径的能量势垒相对较高,因此沿组装体方向的解缚途径是不利的。还发现,解离速率取决于外力(θ)相对于组装体方向的方向。垂直于组装体方向的力分量的存在可以通过驱动键颗粒接近最小路径来显著降低键的寿命。此外,与自发解离(无外力)相比,即使存在推压力也可以促进解离动力学。为了阐明拉动下的有效途径,分析了逃逸位置及其相对于组装体方向的平均方向,随着θ的增加普遍升高,这表明沿最小路径存在力分量是有帮助的。在我们的简单系统中已经证明了外部拉力方向的重要性。因此,在更复杂的解缚实验中应该考虑这种效应。