a Department of Chemical, Biological and Macromolecular Sciences , S. N. Bose National Centre for Basic Sciences , Sector III, Block JD, Salt Lake, Kolkata 700106 , India.
b Unit of Nanoscience and Technology-II and The Thematic Unit of Excellence on Computational Materials Science , S. N. Bose National Centre for Basic Sciences , Sector III, Block JD, Salt Lake, Kolkata 700106 , India.
J Biomol Struct Dyn. 2019 Feb;37(2):493-502. doi: 10.1080/07391102.2018.1430617. Epub 2018 Feb 15.
Here, we study microscopic mechanism of complex formation between Ca-bound calmodulin (holoCaM) and Orai1 that regulates Ca-dependent inactivation process in eukaryotic cells. We compute conformational thermodynamic changes in holoCaM with respect to complex of Orai1 bound to C-terminal domain of holoCaM using histograms of dihedral angles of the proteins over trajectories from molecular dynamics simulations. Our analysis shows that the N-terminal domain residues L4, T5, Q41, N42, T44 and E67 of holoCaM get destabilized and disordered due to Orai1 binding to C-terminal domain of calmodulin affect the N-terminal domain residues. Among these residues, polar T44, having maximum destabilization and disorder via backbone fluctuations, shows the largest change in solvent exposure. This suggests that N-terminal domain is allosterically regulated via T44 by the binding of Orai1 to the C-terminal domain.
在这里,我们研究了 Ca 结合钙调蛋白(全钙调蛋白)与 Orai1 之间形成复合物的微观机制,Orai1 调节真核细胞中的 Ca 依赖性失活过程。我们使用蛋白质的二面角轨迹的直方图,针对 Orai1 与全钙调蛋白的 C 端结构域结合的复合物,计算全钙调蛋白的构象热力学变化。我们的分析表明,由于 Orai1 与钙调蛋白的 C 端结构域结合,全钙调蛋白的 N 端结构域残基 L4、T5、Q41、N42、T44 和 E67 变得不稳定和无序,这会影响 N 端结构域残基。在这些残基中,通过骨架波动导致最大失稳和无序的极性 T44,其溶剂暴露发生最大变化。这表明,通过 Orai1 与 C 端结构域的结合,N 端结构域通过 T44 进行变构调节。