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基于多重 PCR 的下一代测序和人类与大鼠中汉城病毒的全球多样性。

Multiplex PCR-Based Next-Generation Sequencing and Global Diversity of Seoul Virus in Humans and Rats.

出版信息

Emerg Infect Dis. 2018 Feb;24(2):249-257. doi: 10.3201/eid2402.171216.

DOI:10.3201/eid2402.171216
PMID:29350137
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5782898/
Abstract

Seoul virus (SEOV) poses a worldwide public health threat. This virus, which is harbored by Rattus norvegicus and R. rattus rats, is the causative agent of hemorrhagic fever with renal syndrome (HFRS) in humans, which has been reported in Asia, Europe, the Americas, and Africa. Defining SEOV genome sequences plays a critical role in development of preventive and therapeutic strategies against the unique worldwide hantavirus. We applied multiplex PCR-based next-generation sequencing to obtain SEOV genome sequences from clinical and reservoir host specimens. Epidemiologic surveillance of R. norvegicus rats in South Korea during 2000-2016 demonstrated that the serologic prevalence of enzootic SEOV infections was not significant on the basis of sex, weight (age), and season. Viral loads of SEOV in rats showed wide dissemination in tissues and dynamic circulation among populations. Phylogenetic analyses showed the global diversity of SEOV and possible genomic configuration of genetic exchanges.

摘要

首尔病毒(SEOV)对全球公共卫生构成威胁。这种病毒存在于褐家鼠和黑家鼠中,是引起人类肾综合征出血热(HFRS)的病原体,在亚洲、欧洲、美洲和非洲均有报道。定义 SEOV 基因组序列对于开发针对独特的全球汉坦病毒的预防和治疗策略至关重要。我们应用基于多重 PCR 的下一代测序技术从临床和储存宿主标本中获得 SEOV 基因组序列。2000 年至 2016 年期间对韩国褐家鼠的流行病学监测表明,根据性别、体重(年龄)和季节,地方性 SEOV 感染的血清流行率并不显著。SEOV 在大鼠中的病毒载量在组织中广泛传播,并在种群中动态循环。系统发育分析显示了 SEOV 的全球多样性和遗传交换的可能基因组配置。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa62/5782898/5d831e200359/17-1216-F4.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa62/5782898/5d831e200359/17-1216-F4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fa62/5782898/52c03b5d55e5/17-1216-F1.jpg
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