Suppr超能文献

橄榄油中胞外三酰基甘油脂肪酶的真菌筛选:哈茨木霉菌株的选择及全基因组基因搜索

Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes.

作者信息

Canseco-Pérez Miguel Angel, Castillo-Avila Genny Margarita, Chi-Manzanero Bartolomé, Islas-Flores Ignacio, Apolinar-Hernández Max M, Rivera-Muñoz Gerardo, Gamboa-Angulo Marcela, Sanchez-Teyer Felipe, Couoh-Uicab Yeny, Canto-Canché Blondy

机构信息

Unidad de Biotecnología, Centro de Investigación Científica de Yucatán, A.C., Calle 43 No. 130 X 32 y 34, Col. Chuburná de Hidalgo, C.P. 97205 Merida, Mexico.

Centro de Estudios Tecnológicos del Mar No. 17, km 1.5 Carr. Antigua Chelem, C.P. 97320 Yucalpetén, Mexico.

出版信息

Genes (Basel). 2018 Jan 25;9(2):62. doi: 10.3390/genes9020062.

Abstract

A lipolytic screening with fungal strains isolated from lignocellulosic waste collected in banana plantation dumps was carried out. A strain (B13-1) showed good extracellular lipolytic activity (205 UmL). Subsequently, functional screening of the lipolytic activity on Rhodamine B enriched with olive oil as the only carbon source was performed. The successful growth of the strain allows us to suggest that a true lipase is responsible for the lipolytic activity in the B13-1 strain. In order to identify the gene(s) encoding the protein responsible for the lipolytic activity, in silico identification and characterization of triacylglycerol lipases from is reported for the first time. A survey in the genome of this fungus retrieved 50 lipases; however, bioinformatic analyses and putative functional descriptions in different databases allowed us to choose seven lipases as candidates. Suitability of the bioinformatic screening to select the candidates was confirmed by reverse transcription polymerase chain reaction (RT-PCR). The gene codifying 526309 was expressed when the fungus grew in a medium with olive oil as carbon source. This protein shares homology with commercial lipases, making it a candidate for further applications. The success in identifying a lipase gene inducible with olive oil and the suitability of the functional screening and bioinformatic survey carried out herein, support the premise that the strategy can be used in other microorganisms with sequenced genomes to search for true lipases, or other enzymes belonging to large protein families.

摘要

对从香蕉种植园垃圾场收集的木质纤维素废料中分离出的真菌菌株进行了脂肪分解筛选。一株菌株(B13-1)表现出良好的细胞外脂肪分解活性(205 U/mL)。随后,以橄榄油作为唯一碳源富集罗丹明B,对脂肪分解活性进行了功能筛选。该菌株的成功生长使我们认为,一种真正的脂肪酶负责B13-1菌株中的脂肪分解活性。为了鉴定编码负责脂肪分解活性的蛋白质的基因,首次报道了对该真菌三酰甘油脂肪酶的计算机鉴定和表征。在该真菌的基因组中进行的一项调查检索到50种脂肪酶;然而,不同数据库中的生物信息学分析和推定功能描述使我们能够选择7种脂肪酶作为候选者。通过逆转录聚合酶链反应(RT-PCR)证实了生物信息学筛选选择候选者的适用性。当真菌在以橄榄油作为碳源的培养基中生长时,编码526309的基因被表达。该蛋白质与商业脂肪酶具有同源性,使其成为进一步应用的候选者。成功鉴定出可被橄榄油诱导的脂肪酶基因,以及本文进行的功能筛选和生物信息学调查的适用性,支持了该策略可用于其他具有测序基因组的微生物中以寻找真正的脂肪酶或属于大蛋白质家族的其他酶的前提。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb12/5852558/c2d86c3e0271/genes-09-00062-g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验