• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Helios:成功的内部企业高通量筛选和分析系统的历史和解剖学。

Helios: History and Anatomy of a Successful In-House Enterprise High-Throughput Screening and Profiling Data Analysis System.

机构信息

1 Novartis Institutes for BioMedical Research, NIBR Informatics Department, Basel, Switzerland.

2 Cognizant Business Consulting, Zurich, Switzerland.

出版信息

SLAS Discov. 2018 Jun;23(5):474-488. doi: 10.1177/2472555217752140. Epub 2018 Jan 25.

DOI:10.1177/2472555217752140
PMID:29370716
Abstract

We describe the main characteristics of the Novartis Helios data analysis software system (Novartis, Basel, Switzerland) for plate-based screening and profiling assays, which was designed and built about 11 years ago. It has been in productive use for more than 10 years and is one of the important standard software applications running for a large user community at all Novartis Institutes for BioMedical Research sites globally. A high degree of automation is reached by embedding the data analysis capabilities into a software ecosystem that deals with the management of samples, plates, and result data files, including automated data loading. The application provides a series of analytical procedures, ranging from very simple to advanced, which can easily be assembled by users in very flexible ways. This also includes the automatic derivation of a large set of quality control (QC) characteristics at every step. Any of the raw, intermediate, and final results and QC-relevant quantities can be easily explored through linked visualizations. Links to global assay metadata management, data warehouses, and an electronic lab notebook system are in place. Automated transfer of relevant data to data warehouses and electronic lab notebook systems are also implemented.

摘要

我们描述了 Novartis Helios 数据分析软件系统(瑞士巴塞尔的诺华公司)的主要特点,该系统用于平板筛选和分析检测,大约在 11 年前设计和构建。它已经使用了 10 多年,是诺华生物医学研究所全球所有站点运行的大型用户社区的重要标准软件应用程序之一。通过将数据分析功能嵌入到一个处理样本、平板和结果数据文件管理的软件生态系统中,可以实现高度自动化,包括自动数据加载。该应用程序提供了一系列分析程序,从非常简单到高级的程序,用户可以非常灵活地以各种方式轻松组装。这还包括在每个步骤自动推导大量的质量控制(QC)特征。任何原始、中间和最终结果以及与 QC 相关的数量都可以通过链接的可视化轻松探索。与全球检测元数据管理、数据仓库和电子实验室笔记本系统的链接已经建立。还实现了将相关数据自动传输到数据仓库和电子实验室笔记本系统。

相似文献

1
Helios: History and Anatomy of a Successful In-House Enterprise High-Throughput Screening and Profiling Data Analysis System.Helios:成功的内部企业高通量筛选和分析系统的历史和解剖学。
SLAS Discov. 2018 Jun;23(5):474-488. doi: 10.1177/2472555217752140. Epub 2018 Jan 25.
2
Metadata management for high content screening in OMERO.OMERO中高内涵筛选的元数据管理。
Methods. 2016 Mar 1;96:27-32. doi: 10.1016/j.ymeth.2015.10.006. Epub 2015 Oct 22.
3
The myImageAnalysis project: a web-based application for high-content screening.myImageAnalysis项目:一个用于高内涵筛选的基于网络的应用程序。
Assay Drug Dev Technol. 2014 Jan-Feb;12(1):87-99. doi: 10.1089/adt.2013.532.
4
A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.一个基于动态可扩展数据模型的存储库,支持神经科学的多学科研究。
BMC Med Inform Decis Mak. 2012 Oct 8;12:115. doi: 10.1186/1472-6947-12-115.
5
Program-Guided Design of High-Throughput Enzyme Screening Experiments and Automated Data Analysis/Evaluation.高通量酶筛选实验的程序引导设计及自动化数据分析/评估
Methods Mol Biol. 2018;1685:269-282. doi: 10.1007/978-1-4939-7366-8_16.
6
Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping.用于基因分型工作流程的实验室信息管理软件:在高通量作物基因分型中的应用
BMC Bioinformatics. 2006 Aug 17;7:383. doi: 10.1186/1471-2105-7-383.
7
A robust CETSA data analysis automation workflow for routine screening.一种用于常规筛选的稳健 CETSA 数据分析自动化工作流程。
SLAS Discov. 2024 Jul;29(5):100172. doi: 10.1016/j.slasd.2024.100172. Epub 2024 Jul 3.
8
A digital repository with an extensible data model for biobanking and genomic analysis management.一个具有可扩展数据模型的数字存储库,用于生物样本库和基因组分析管理。
BMC Genomics. 2014;15 Suppl 3(Suppl 3):S3. doi: 10.1186/1471-2164-15-S3-S3. Epub 2014 May 6.
9
Biowep: a workflow enactment portal for bioinformatics applications.生物工作流引擎(Biowep):一个用于生物信息学应用的工作流制定门户。
BMC Bioinformatics. 2007 Mar 8;8 Suppl 1(Suppl 1):S19. doi: 10.1186/1471-2105-8-S1-S19.
10
A primer on screening data management.筛查数据管理入门
J Biomol Screen. 2009 Sep;14(8):999-1007. doi: 10.1177/1087057109341767. Epub 2009 Jul 30.

引用本文的文献

1
Suppressing Tymovirus replication in plants using a variant of ubiquitin.利用泛素变体抑制植物中的番茄病毒复制。
PLoS Pathog. 2025 Jan 27;21(1):e1012899. doi: 10.1371/journal.ppat.1012899. eCollection 2025 Jan.
2
Cryptosporidium PI(4)K inhibitor EDI048 is a gut-restricted parasiticidal agent to treat paediatric enteric cryptosporidiosis.隐孢子虫 PI(4)K 抑制剂 EDI048 是一种局限于肠道的杀寄生虫药物,可用于治疗儿科肠道隐孢子虫病。
Nat Microbiol. 2024 Nov;9(11):2817-2835. doi: 10.1038/s41564-024-01810-x. Epub 2024 Oct 8.
3
Discovery of WRN inhibitor HRO761 with synthetic lethality in MSI cancers.
WRN 抑制剂 HRO761 在 MSI 癌症中具有合成致死性。
Nature. 2024 May;629(8011):443-449. doi: 10.1038/s41586-024-07350-y. Epub 2024 Apr 24.
4
Direct and selective pharmacological disruption of the YAP-TEAD interface by IAG933 inhibits Hippo-dependent and RAS-MAPK-altered cancers.通过 IAG933 直接且选择性地抑制 YAP-TEAD 界面,可抑制 Hippo 依赖性和 RAS-MAPK 改变的癌症。
Nat Cancer. 2024 Jul;5(7):1102-1120. doi: 10.1038/s43018-024-00754-9. Epub 2024 Apr 2.
5
Discovery and Preclinical Pharmacology of INE963, a Potent and Fast-Acting Blood-Stage Antimalarial with a High Barrier to Resistance and Potential for Single-Dose Cures in Uncomplicated Malaria.INE963 的发现和临床前药理学研究:一种强效、速效的血期抗疟药,具有较高的抗药性屏障,有可能单剂治愈复杂疟疾。
J Med Chem. 2022 Mar 10;65(5):3798-3813. doi: 10.1021/acs.jmedchem.1c01995. Epub 2022 Mar 1.
6
High-Throughput Screen for Inhibitors of Virulence Using a Co-Culture Surrogate Host Model.使用共培养替代宿主模型对毒力抑制剂进行高通量筛选
ACS Omega. 2022 Feb 1;7(6):5401-5414. doi: 10.1021/acsomega.1c06633. eCollection 2022 Feb 15.
7
Identification of deubiquitinase inhibitors via high-throughput screening using a fluorogenic ubiquitin-rhodamine assay.通过使用荧光素标记的泛素-罗丹明检测法进行高通量筛选鉴定去泛素化酶抑制剂。
STAR Protoc. 2021 Oct 19;2(4):100896. doi: 10.1016/j.xpro.2021.100896. eCollection 2021 Dec 17.
8
Identification and validation of selective deubiquitinase inhibitors.选择性去泛素化酶抑制剂的鉴定和验证。
Cell Chem Biol. 2021 Dec 16;28(12):1758-1771.e13. doi: 10.1016/j.chembiol.2021.05.012. Epub 2021 Jun 14.
9
Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol. jawsamycin 通过抑制 Spt14/Gpi3 介导的糖基磷脂酰肌醇生物合成表现出体内抗真菌特性。
Nat Commun. 2020 Jul 7;11(1):3387. doi: 10.1038/s41467-020-17221-5.
10
Gene-signature-derived ICs/ECs reflect the potency of causative upstream targets and downstream phenotypes.基于基因特征的 ICs/ECs 反映了上游因果靶点和下游表型的效力。
Sci Rep. 2020 Jun 15;10(1):9670. doi: 10.1038/s41598-020-66533-5.