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利用弛豫分散 NMR 光谱学测量和表征氢氘交换化学。

Measurement and Characterization of Hydrogen-Deuterium Exchange Chemistry Using Relaxation Dispersion NMR Spectroscopy.

机构信息

Protein Analytical Chemistry, ‡Early Discovery Biochemistry, and §Late Stage Pharmaceutical Development, Genentech, Inc. , 1 DNA Way, South San Francisco, California 94080, United States.

出版信息

J Phys Chem B. 2018 Mar 1;122(8):2368-2378. doi: 10.1021/acs.jpcb.7b10849. Epub 2018 Feb 15.

Abstract

One-dimensional heteronuclear relaxation dispersion NMR spectroscopy at C natural abundance successfully characterized the dynamics of the hydrogen-deuterium exchange reaction occurring at the N position in l-arginine by monitoring C in varying amounts of DO. A small equilibrium isotope effect was observed and quantified, corresponding to ΔG = -0.14 kcal mol. A bimolecular rate constant of k = 5.1 × 10 s M was determined from the pH*-dependence of k (where pH* is the direct electrode reading of pH in 10% DO and k is the nuclear spin exchange rate constant), consistent with diffusion-controlled kinetics. The measurement of ΔG serves to bridge the millisecond time scale lifetimes of the detectable positively charged arginine species with the nanosecond time scale lifetime of the nonobservable low-populated neutral arginine intermediate species, thus allowing for characterization of the equilibrium lifetimes of the various arginine species in solution as a function of fractional solvent deuterium content. Despite the system being in fast exchange on the chemical shift time scale, the magnitude of the secondary isotope shift due to the exchange reaction at N was accurately measured to be 0.12 ppm directly from curve-fitting DO-dependent dispersion data collected at a single static field strength. These results indicate that relaxation dispersion NMR spectroscopy is a robust and general method for studying base-catalyzed hydrogen-deuterium exchange chemistry at equilibrium.

摘要

一维异核弛豫色散 NMR 光谱在 C 天然丰度下成功地对 l-精氨酸中 N 位置的氢氘交换反应动力学进行了特征化,通过监测 DO 中不同含量的 C 来实现。观察到并量化了一个小的平衡同位素效应,对应于 ΔG = -0.14 kcal/mol。从 k(其中 pH* 是 10% DO 中 pH 的直接电极读数,k 是核自旋交换速率常数)的 pH*-依赖性确定了双分子速率常数 k = 5.1×10 s M,这与扩散控制动力学一致。ΔG 的测量将可检测的带正电荷的精氨酸物种的毫秒时间尺度寿命与不可观测的低 populate 中性精氨酸中间物种的纳秒时间尺度寿命联系起来,从而允许对溶液中各种精氨酸物种的平衡寿命作为分数溶剂氘含量的函数进行特征化。尽管在化学位移时间尺度上该体系处于快速交换状态,但通过直接从在单个静态场强度下收集的依赖 DO 的弥散数据进行曲线拟合,准确测量到由于 N 处的交换反应引起的二级同位素位移的幅度为 0.12 ppm。这些结果表明,弛豫色散 NMR 光谱是研究平衡时碱基催化的氢氘交换化学的一种强大而通用的方法。

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