Musolf Anthony M, Simpson Claire L, Long Kyle A, Moiz Bilal A, Lewis Deyana D, Middlebrooks Candace D, Portas Laura, Murgia Federico, Ciner Elise B, Bailey-Wilson Joan E, Stambolian Dwight
Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD.
Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN.
Mol Vis. 2018 Jan 14;24:29-42. eCollection 2018.
To determine genetic linkage between myopia and Han Chinese patients with a family history of the disease.
One hundred seventy-six Han Chinese patients from 34 extended families were given eye examinations, and mean spherical equivalent (MSE) in diopters (D) was calculated by adding the spherical component of the refraction to one-half the cylindrical component and taking the average of both eyes. The MSE was converted to a binary phenotype, where all patients with an MSE of -1.00 D or less were coded as affected. Unaffected individuals had an MSE greater than 0.00 D (ages 21 years and up), +1.50 (ages 11-20), or +2.00 D (ages 6-10 years). Individuals between the given upper threshold and -1.00 were coded as unknown. Patients were genotyped on an exome chip. Three types of linkage analyses were performed: single-variant two-point, multipoint, and collapsed haplotype pattern (CHP) variant two-point.
The CHP variant two-point results identified a significant peak (heterogeneity logarithm of the odds [HLOD] = 3.73) at 10q26.13 in . The single-variant two-point and multipoint analyses showed highly suggestive linkage to the same region. The single-variant two-point results identified 25 suggestive variants at , also at 10q26.13.
We report a significant genetic linkage between myopia and Han Chinese patients at 10q26.13. 10q26.13 contains several good candidate genes, such as and the known age-related macular degeneration gene . Targeted sequencing of the region is planned to identify the causal variant(s).
确定近视与有家族病史的汉族患者之间的基因连锁关系。
对来自34个大家庭的176名汉族患者进行眼部检查,通过将验光的球镜成分加上柱镜成分的一半并取双眼的平均值来计算以屈光度(D)为单位的平均球镜当量(MSE)。MSE被转换为二元表型,所有MSE为-1.00 D或更低的患者被编码为患病。未患病个体的MSE大于0.00 D(21岁及以上)、+1.50(11 - 20岁)或+2.00 D(6 - 10岁)。给定上限阈值和-1.00之间的个体被编码为未知。患者在全外显子芯片上进行基因分型。进行了三种类型的连锁分析:单变体两点分析、多点分析和压缩单倍型模式(CHP)变体两点分析。
CHP变体两点分析结果在10q26.13处确定了一个显著峰值(异质性优势对数[HLOD] = 3.73)。单变体两点分析和多点分析显示与同一区域有高度提示性的连锁关系。单变体两点分析结果在10q26.13处也确定了25个提示性变体。
我们报告了近视与汉族患者在10q26.13处存在显著的基因连锁关系。10q26.13包含几个良好的候选基因,如 和已知的年龄相关性黄斑变性基因 。计划对该区域进行靶向测序以确定致病变体。