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通过测序分型数据揭示的阿根廷向日葵中的基因流动

Gene flow in Argentinian sunflowers as revealed by genotyping-by-sequencing data.

作者信息

Mondon Ana, Owens Gregory L, Poverene Mónica, Cantamutto Miguel, Rieseberg Loren H

机构信息

Centro de Recursos Naturales Renovables de la Zona Semiárida (CERZOS) CCT Bahía Blanca Provincia de Buenos Aires Argentina.

Department of Botany and Biodiversity Research Centre University of British Columbia Vancouver BC Canada.

出版信息

Evol Appl. 2017 Dec 3;11(2):193-204. doi: 10.1111/eva.12527. eCollection 2018 Feb.

Abstract

Gene flow can have several different applied consequences, ranging from extinction to the escape of transgenes to the evolution of weedy or invasive lineages. Here, we describe patterns of hybridization and gene flow involving domesticated and wild sunflowers in Argentina. To address the risks of introgression of variants from the cultivated sunflower into invasive wild , we used genotyping-by-sequencing (GBS) to genotype 182 samples from 11 sites in Argentina, along with previously published data from samples from the native range (North America), to determine the native source populations of the Argentinian samples and to detect admixture. We unexpectedly discovered two distinctive forms of in Argentina, one from subsp. as expected, but the other from an unknown source. Extensive admixture was observed among Argentinian sunflowers, largely confirming phenotypic predictions. While many hybrids are F1s, there were signals consistent with introgression from the domesticated sunflower into . Whether this introgression is incidental or a causal driver of invasiveness is not yet clear, but it seems likely that genes found in the domesticated sunflower genome (whether engineered or not) will quickly find their way into wild Argentinian sunflower populations.

摘要

基因流动可能会产生几种不同的实际后果,从物种灭绝到转基因逃逸,再到杂草或入侵谱系的进化。在这里,我们描述了阿根廷境内涉及驯化向日葵和野生向日葵的杂交和基因流动模式。为了应对栽培向日葵的变异基因渗入入侵性野生向日葵的风险,我们使用简化基因组测序(GBS)对来自阿根廷11个地点的182个样本进行基因分型,并结合之前发表的来自原生范围(北美)样本的数据,以确定阿根廷样本的原生来源种群并检测基因混合情况。我们意外地在阿根廷发现了两种独特的野生向日葵类型,一种如预期的那样来自油葵亚种,但另一种来源不明。在阿根廷的向日葵中观察到了广泛的基因混合现象,这在很大程度上证实了表型预测。虽然许多杂交种是F1代,但有迹象表明存在从驯化向日葵渗入野生向日葵的情况。这种基因渗入是偶然的还是入侵性的一个因果驱动因素尚不清楚,但驯化向日葵基因组中发现的基因(无论是否经过基因工程改造)似乎很可能会迅速进入阿根廷野生向日葵种群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f947/5775495/a000f2753494/EVA-11-193-g001.jpg

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