Department of Chemistry , The University of Utah , Salt Lake City , Utah 84112-0580 , United States.
Institute for Fiber Engineering , Shinshu University , Ueda , Nagano 386-8567 , Japan.
J Am Chem Soc. 2018 Apr 11;140(14):4803-4811. doi: 10.1021/jacs.7b13630. Epub 2018 Feb 14.
Antifreeze molecules allow organisms to survive in subzero environments. Antifreeze glycoproteins (AFGPs), produced by polar fish, are the most potent inhibitors of ice recrystallization. To date, the molecular mechanism by which AFGPs bind to ice has not yet been elucidated. Mutation experiments cannot resolve whether the binding occurs through the peptide, the saccharides, or both. Here, we use molecular simulations to determine the mechanism and driving forces for binding of AFGP8 to ice, its selectivity for the primary prismatic plane, and the molecular origin of its exceptional ice recrystallization activity. Consistent with experiments, AFGP8 in simulations preferentially adopts the PPII helix secondary structure in solution. We show that the segregation of hydrophilic and hydrophobic groups in the PPII helix is vital for ice binding. Binding occurs through adsorption of methyl groups of the peptide and disaccharides to ice, driven by the entropy of dehydration of the hydrophobic groups as they nest in the cavities at the ice surface. The selectivity to the primary prismatic plane originates in the deeper cavities it has compared to the basal plane. We estimate the free energy of binding of AFGP8 and the longer AFGPs4-6, and find them to be consistent with the reversible binding demonstrated in experiments. The simulations reveal that AFGP8 binds to ice through a myriad of conformations that it uses to diffuse through the ice surface and find ice steps, to which it strongly adsorbs. We interpret that the existence of multiple, weak binding sites is the key for the exceptional ice recrystallization inhibition activity of AFGPs.
抗冻分子使生物能够在零下的环境中生存。由极地鱼类产生的抗冻糖蛋白 (AFGPs) 是最有效的冰晶再结晶抑制剂。迄今为止,AFGP 与冰结合的分子机制尚未阐明。突变实验无法确定结合是通过肽、糖还是两者共同发生的。在这里,我们使用分子模拟来确定 AFGP8 与冰结合的机制和驱动力、其对初级棱柱面的选择性以及其异常冰晶再结晶活性的分子起源。与实验一致,模拟中的 AFGP8 优先在溶液中采用 PPII 螺旋二级结构。我们表明,PPII 螺旋中亲水区和疏水区的分离对于冰结合至关重要。结合通过肽和二糖的甲基与冰的吸附发生,由疏水区在冰表面的腔中嵌套时的脱水熵驱动。对初级棱柱面的选择性源于与基面相比它具有更深的腔。我们估计了 AFGP8 和更长的 AFGPs4-6 的结合自由能,并发现它们与实验中证明的可逆结合一致。模拟表明,AFGP8 通过其用于在冰表面扩散并找到冰阶的众多构象与冰结合,它强烈吸附在冰阶上。我们认为,多个弱结合位点的存在是 AFGP 具有异常冰晶再结晶抑制活性的关键。