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种系分化速率和宿主跳跃频率的转变塑造了核盘菌科真菌植物病原菌宿主范围多样性。

Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens.

机构信息

LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.

Warwick Crop Centre, School of Life Sciences, University of Warwick, Coventry, UK.

出版信息

Mol Ecol. 2018 Mar;27(5):1309-1323. doi: 10.1111/mec.14523. Epub 2018 Mar 23.

Abstract

The range of hosts that a parasite can infect in nature is a trait determined by its own evolutionary history and that of its potential hosts. However, knowledge on host range diversity and evolution at the family level is often lacking. Here, we investigate host range variation and diversification trends within the Sclerotiniaceae, a family of Ascomycete fungi. Using a phylogenetic framework, we associate diversification rates, the frequency of host jump events and host range variation during the evolution of this family. Variations in diversification rate during the evolution of the Sclerotiniaceae define three major macro-evolutionary regimes with contrasted proportions of species infecting a broad range of hosts. Host-parasite cophylogenetic analyses pointed towards parasite radiation on distant hosts long after host speciation (host jump or duplication events) as the dominant mode of association with plants in the Sclerotiniaceae. The intermediate macro-evolutionary regime showed a low diversification rate, high frequency of duplication events and the highest proportion of broad host range species. Our findings suggest that the emergence of broad host range fungal pathogens results largely from host jumps, as previously reported for oomycete parasites, probably combined with low speciation rates. These results have important implications for our understanding of fungal parasites evolution and are of particular relevance for the durable management of disease epidemics.

摘要

寄生虫在自然界中可以感染的宿主范围是由其自身的进化历史和潜在宿主的进化历史决定的。然而,关于宿主范围多样性和家族水平进化的知识往往是缺乏的。在这里,我们研究了子囊菌真菌的 Sclerotiniaceae 家族中宿主范围的变化和多样化趋势。我们使用系统发育框架,将分化速率、宿主跳跃事件的频率以及该家族进化过程中的宿主范围变化联系起来。Sclerotiniaceae 进化过程中多样化速率的变化定义了三个主要的宏观进化阶段,具有感染广泛宿主的物种的比例不同。宿主-寄生虫共进化分析表明,寄生虫在寄主物种形成后很久就会在遥远的寄主上辐射(宿主跳跃或复制事件),这是 Sclerotiniaceae 与植物关联的主要模式。中间的宏观进化阶段表现出低分化速率、高重复事件频率和最高比例的广泛宿主范围物种。我们的研究结果表明,与先前报道的卵菌寄生虫一样,广泛宿主范围真菌病原体的出现主要是由于宿主跳跃,可能与低物种形成率有关。这些结果对我们理解真菌寄生虫的进化具有重要意义,对持久管理疾病流行尤为重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce8/5900718/47f5eacc109b/MEC-27-1309-g001.jpg

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