Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115.
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1710-E1719. doi: 10.1073/pnas.1717560115. Epub 2018 Feb 5.
Studies over the past decade have highlighted the functional significance of intrinsically disordered proteins (IDPs). Due to conformational heterogeneity and inherent dynamics, structural studies of IDPs have relied mostly on NMR spectroscopy, despite IDPs having characteristics that make them challenging to study using traditional H-detected biomolecular NMR techniques. Here, we develop a suite of 3D N-detected experiments that take advantage of the slower transverse relaxation property of N nuclei, the associated narrower linewidth, and the greater chemical shift dispersion compared with those of H and C resonances. The six 3D experiments described here start with aliphatic H magnetization to take advantage of its higher initial polarization, and are broadly applicable for backbone assignment of proteins that are disordered, dynamic, or have unfavorable amide proton exchange rates. Using these experiments, backbone resonance assignments were completed for the unstructured regulatory domain (residues 131-294) of the human transcription factor nuclear factor of activated T cells (NFATC2), which includes 28 proline residues located in functionally important serine-proline (SP) repeats. The complete assignment of the NFATC2 regulatory domain enabled us to study phosphorylation of NFAT by kinase PKA and phosphorylation-dependent binding of chaperone protein 14-3-3 to NFAT, providing mechanistic insight on how 14-3-3 regulates NFAT nuclear translocation.
过去十年的研究强调了无规卷曲蛋白质(IDP)的功能重要性。由于构象异质性和固有动力学,IDP 的结构研究主要依赖于 NMR 光谱学,尽管 IDP 具有使其难以使用传统的 H 检测生物分子 NMR 技术进行研究的特征。在这里,我们开发了一套 3D N 检测实验,利用 N 核较慢的横向弛豫特性、相关的较窄线宽以及与 H 和 C 共振相比更大的化学位移分散性。这里描述的六个 3D 实验从脂肪族 H 磁化开始,利用其较高的初始极化,广泛适用于无序、动态或酰胺质子交换率不利的蛋白质的骨架分配。使用这些实验,完成了人类转录因子激活 T 细胞核因子(NFATC2)无规卷曲调节域(残基 131-294)的骨架共振分配,其中包括 28 个脯氨酸残基,位于功能重要的丝氨酸-脯氨酸(SP)重复中。NFATC2 调节域的完整分配使我们能够研究激酶 PKA 对 NFAT 的磷酸化以及伴侣蛋白 14-3-3 对 NFAT 的磷酸化依赖性结合,为 14-3-3 如何调节 NFAT 核易位提供了机制见解。