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用于H-N异核相关研究内在无序蛋白质的N检测TROSY:提高光谱质量的策略

N-detected TROSY for H-N heteronuclear correlation to study intrinsically disordered proteins: strategies to increase spectral quality.

作者信息

Rodella Maria Anna, Schneider Robert, Kümmerle Rainer, Felli Isabella C, Pierattelli Roberta

机构信息

Department of Chemistry "Ugo Schiff" and Magnetic Resonance Center (CERM), University of Florence, Florence, Italy.

Bruker BioSpin AG, Fällanden, Switzerland.

出版信息

J Biomol NMR. 2025 Mar;79(1):15-24. doi: 10.1007/s10858-024-00453-8. Epub 2025 Jan 22.

DOI:10.1007/s10858-024-00453-8
PMID:39841395
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11832566/
Abstract

Intrinsically disordered proteins and protein regions are central to many biological processes but difficult to characterize at atomic resolution. Nuclear magnetic resonance is particularly well-suited for providing structural and dynamical information on intrinsically disordered proteins, but existing NMR methodologies need to be constantly refined to provide greater sensitivity and resolution, particularly to capitalise on the potential of high magnetic fields to investigate large proteins. In this paper, we describe how N-detected 2D NMR experiments can be optimised for better performance. We show that using selective aliphatic H decoupling in N-TROSY type experiments results in significant increases in sensitivity and resolution for a prototypical intrinsically disordered protein, α-synuclein, as well as for a heterogeneous intrinsically disordered region of a large multidomain protein, CBP-ID4. We also investigated the performance of incorporating longitudinal relaxation enhancement in N-TROSY experiments, both with and without aliphatic H decoupling, and discussed the findings in light of the available information for the two systems.

摘要

内在无序蛋白质和蛋白质区域在许多生物过程中起着核心作用,但难以在原子分辨率下进行表征。核磁共振特别适合于提供关于内在无序蛋白质的结构和动力学信息,但现有的核磁共振方法需要不断改进,以提供更高的灵敏度和分辨率,特别是要利用高磁场的潜力来研究大蛋白质。在本文中,我们描述了如何优化N检测二维核磁共振实验以获得更好的性能。我们表明,在N-TROSY型实验中使用选择性脂肪族H去耦会显著提高原型内在无序蛋白质α-突触核蛋白以及大型多结构域蛋白质CBP-ID4的异质内在无序区域的灵敏度和分辨率。我们还研究了在N-TROSY实验中加入纵向弛豫增强的性能,包括有无脂肪族H去耦,并根据这两个系统的现有信息讨论了研究结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/95d9f2fe4517/10858_2024_453_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/96ba0844d467/10858_2024_453_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/c94909bd7b61/10858_2024_453_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/67cbaa851d3c/10858_2024_453_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/68365d38167f/10858_2024_453_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/95d9f2fe4517/10858_2024_453_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/96ba0844d467/10858_2024_453_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/c94909bd7b61/10858_2024_453_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/67cbaa851d3c/10858_2024_453_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/68365d38167f/10858_2024_453_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d508/11832566/95d9f2fe4517/10858_2024_453_Fig5_HTML.jpg

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本文引用的文献

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Nat Protoc. 2024 Feb;19(2):406-440. doi: 10.1038/s41596-023-00921-9. Epub 2023 Dec 12.
2
N-Detected TROSY NMR experiments to study large disordered proteins in high-field magnets.N-检测 TROSY NMR 实验可用于在高场磁体中研究大型无序蛋白质。
Chem Commun (Camb). 2022 Aug 23;58(68):9512-9515. doi: 10.1039/d2cc02005j.
3
N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.
N 检测利用了氮气的缓慢弛豫特性:为天然无序蛋白提供了增强的分辨率。
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Direct detection of carbon and nitrogen nuclei for high-resolution analysis of intrinsically disordered proteins using NMR spectroscopy.利用 NMR 光谱学直接检测碳和氮原子核,实现对天然无序蛋白质的高分辨率分析。
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Evaluation of N-detected H-N correlation experiments on increasingly large RNAs.对越来越大的RNA进行氮检测氢-氮相关实验的评估。
J Biomol NMR. 2017 Sep;69(1):31-44. doi: 10.1007/s10858-017-0132-7. Epub 2017 Sep 6.
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CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis.CcpNmr分析分配:一个用于综合核磁共振分析的灵活平台。
J Biomol NMR. 2016 Oct;66(2):111-124. doi: 10.1007/s10858-016-0060-y. Epub 2016 Sep 23.
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Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.在生理盐条件下,对于非氘代的大蛋白质,氮检测的TROSY与质子检测的TROSY具有相当的灵敏度。
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