Dong Yuanqiu, Li Bo, Zhou Lizhi
a School of Resources and Envirodnmental Engineering , Anhui University , Hefei , China.
b Anhui Biodiversity Information Center , Hefei , Anhui , China.
Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Dec;29(8):1245-1252. doi: 10.1080/24701394.2018.1439026. Epub 2018 Feb 18.
Dusky thrush complex comprises of two sister species breeding in SC Siberia, which is the member of thrush Turdus from Turdidae. The phylogenetic resolution of Dusky thrush complex remains controversial, and a detailed research is still necessary. In this research, we determined the complete mtDNAs of both species, and estimated phylogenetic trees based on the mtDNA alignment of these and 21 other Turdidae species, to clarify the taxa status of the Dusky thrush complex. The squenced lengths of these three mitochondrial genomes were 16,737, 16,788 and 16,750 bp. The mtDNAs are circular molecules, containing the 37 typical genes, with an identical gene order and arrangement as those of other Turdidae. The ATG and TAA, respectively, are observed the most commonly start and stop codon. Most of the tRNA could be folded into the canonical cloverleaf secondary structure except for tRNA (AGY) and tRNA (CUN), which lose 'DHU' arm. The control region presented a higher A + T content than the average value for the whole mitogenome. The phylogenetic trees reconstructed by the concatenated nucleotide sequences of mtDNA genes (Cyt b, ND2 and COI) indicate the Dusky thrush complex cannot be divided into two species, but the relationships between Dusky thrush subspecies still need additional study. This study improves our understanding of mitogenomic structure and evolution of the Dusky thrush complex, which can provide further insights into our understanding of phylogeny and taxonomy in Turdidae.
暗褐鸫复合体由两个姐妹物种组成,它们在西伯利亚南部繁殖,属于鸫科鸫属。暗褐鸫复合体的系统发育解析仍存在争议,仍需进行详细研究。在本研究中,我们测定了这两个物种的完整线粒体DNA,并基于这些物种与其他21种鸫科物种的线粒体DNA比对结果构建了系统发育树,以阐明暗褐鸫复合体的分类地位。这三个线粒体基因组的测序长度分别为16,737、16,788和16,750 bp。线粒体DNA为环状分子,包含37个典型基因,基因顺序和排列与其他鸫科物种相同。最常见的起始密码子和终止密码子分别是ATG和TAA。除了tRNA(AGY)和tRNA(CUN)失去了“DHU”臂外,大多数tRNA都能折叠成典型的三叶草二级结构。控制区的A+T含量高于整个线粒体基因组的平均值。通过线粒体DNA基因(Cyt b、ND2和COI)的串联核苷酸序列重建的系统发育树表明,暗褐鸫复合体不能分为两个物种,但暗褐鸫亚种之间的关系仍需进一步研究。本研究增进了我们对暗褐鸫复合体线粒体基因组结构和进化的理解,可为我们进一步了解鸫科的系统发育和分类学提供见解。