a Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology , Jadavpur University , Kolkata 700 032 , India.
SAR QSAR Environ Res. 2018 Apr;29(4):319-337. doi: 10.1080/1062936X.2018.1436086.
Persistent, bioaccumulative and toxic (PBT) chemicals symbolize a group of substances that are not easily degraded; instead, they accumulate in different organisms and exhibit an acute or chronic toxicity. The limited empirical data on PBT chemicals, the high cost of testing together with the regulatory constraints and the international push for reduced animal testing motivate a greater reliance on predictive computational methods like quantitative structure-activity relationship (QSAR) models in PBT assessment. Papa and Gramatica have recently proposed a PBT index that could be computed directly from structural features. In the current study, we have modelled the experimentally derived PBT index data using an extended topological atom (ETA) along with constitutional descriptors to show the usefulness of the ETA indices in modelling the endpoint. The models developed through a double cross-validation (DCV) method gave the best results in terms of both internal and external validation metrics. The developed models were comparable in predictive quality to those previously reported. The current models were further used for consensus predictions of PBT behaviour for a set of pharmaceuticals and a set of synthetic drug-like compounds. The developed models can be used in PBT hazard screening for identification and prioritization of chemicals from the structural information alone.
持久性、生物累积性和毒性 (PBT) 化学物质代表了一组不易降解的物质;相反,它们在不同的生物体中积累,并表现出急性或慢性毒性。关于 PBT 化学物质的经验数据有限,测试成本高,加上监管限制以及减少动物测试的国际推动,促使人们更加依赖于预测计算方法,如定量构效关系 (QSAR) 模型在 PBT 评估中。Papa 和 Gramatica 最近提出了一种可以直接从结构特征计算的 PBT 指数。在当前的研究中,我们使用扩展拓扑原子 (ETA) 以及结构描述符对实验得出的 PBT 指数数据进行建模,以展示 ETA 指数在模拟终点方面的有用性。通过双交叉验证 (DCV) 方法开发的模型在内部和外部验证指标方面都取得了最佳结果。所开发的模型在预测质量上可与以前报告的模型相媲美。当前的模型进一步用于一组药物和一组合成类似药物的化合物的 PBT 行为的共识预测。开发的模型可以用于 PBT 危害筛选,仅从结构信息即可识别和优先考虑化学品。