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霍利迪连接体DNA重组中间体的制备与解析

Preparation and Resolution of Holliday Junction DNA Recombination Intermediates.

作者信息

Shah Punatar Rajvee, West Stephen C

机构信息

The Francis Crick Institute, London, United Kingdom.

The Francis Crick Institute, London, United Kingdom.

出版信息

Methods Enzymol. 2018;600:569-590. doi: 10.1016/bs.mie.2017.11.022. Epub 2018 Jan 9.

DOI:10.1016/bs.mie.2017.11.022
PMID:29458775
Abstract

Holliday junctions provide a covalent link between recombining DNA molecules and need to be removed prior to chromosome segregation at mitosis. Defects in their resolution lead to mitotic catastrophe, characterized by the formation of DNA breaks and chromosome aberrations. Enzymes that resolve recombination intermediates have been identified in all forms of life, from bacteriophage, to bacteria, yeast, and humans. In higher eukaryotes, Holliday junctions are resolved by GEN1, a nuclease that is mechanistically similar to the prototypic resolvase Escherichia coli RuvC, and by the SMX trinuclease complex. Studies of these enzymes have been facilitated by the use of plasmid-sized DNA recombination intermediates made by RecA-mediated strand exchange. Here, we detail the preparation of these recombination intermediates, which resemble α-structures, and their resolution by RuvC and GEN1.

摘要

霍利迪连接体在重组DNA分子之间提供共价连接,并且在有丝分裂时染色体分离之前需要被移除。其解离缺陷会导致有丝分裂灾难,其特征是形成DNA断裂和染色体畸变。从噬菌体到细菌、酵母和人类,在所有生命形式中都已鉴定出可解离重组中间体的酶。在高等真核生物中,霍利迪连接体由GEN1(一种在机制上类似于原型解离酶大肠杆菌RuvC的核酸酶)和SMX三核酸酶复合体解离。通过使用由RecA介导的链交换产生的质粒大小的DNA重组中间体,对这些酶的研究得到了促进。在这里,我们详细介绍这些类似于α结构的重组中间体的制备及其被RuvC和GEN1解离的过程。

相似文献

1
Preparation and Resolution of Holliday Junction DNA Recombination Intermediates.霍利迪连接体DNA重组中间体的制备与解析
Methods Enzymol. 2018;600:569-590. doi: 10.1016/bs.mie.2017.11.022. Epub 2018 Jan 9.
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Resolution of single and double Holliday junction recombination intermediates by GEN1.GEN1对单链和双链霍利迪连接体重组中间体的拆分
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GEN1 Endonuclease: Purification and Nuclease Assays.GEN1核酸内切酶:纯化及核酸酶测定
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GEN1 promotes Holliday junction resolution by a coordinated nick and counter-nick mechanism.GEN1通过一种协同的切口和反切口机制促进霍利迪连接体的解离。
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Recombinational repair in the absence of holliday junction resolvases in E. coli.在大肠杆菌中没有 Holliday junction resolvases 的情况下进行重组修复。
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Efficient second strand cleavage during Holliday junction resolution by RuvC requires both increased junction flexibility and an exposed 5' phosphate.RuvC在Holiday连接体解离过程中进行高效的第二链切割需要连接体灵活性增加以及一个暴露的5'磷酸基团。
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引用本文的文献

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Generation of double Holliday junction DNAs and their dissolution/resolution within a chromatin context.在染色质环境中生成双链 Holliday 连接 DNA 及其溶解/解析。
Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2123420119. doi: 10.1073/pnas.2123420119. Epub 2022 Apr 22.