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基于稀释透析微流控芯片(DDMC)的蛋白质复性效率提升的建模、模拟与应用。

Modeling, simulation, and employing dilution-dialysis microfluidic chip (DDMC) for heightening proteins refolding efficiency.

机构信息

Department of Life Science Engineering, Faculty of Disciplinary New Science and Technology, University of Tehran, Tehran, Iran.

School of Biology, College of Science, University of Tehran, Tehran, Iran.

出版信息

Bioprocess Biosyst Eng. 2018 May;41(5):707-714. doi: 10.1007/s00449-018-1904-5. Epub 2018 Feb 22.

Abstract

Miniaturized systems based on the principles of microfluidics are widely used in various fields, such as biochemical and biomedical applications. Systematic design processes are demanded the proper use of these microfluidic devices based on mathematical simulations. Aggregated proteins (e.g., inclusion bodies) in solution with chaotropic agents (such as urea) at high concentration in combination with reducing agents are denatured. Refolding methods to achieve the native proteins from inclusion bodies of recombinant protein relying on denaturant dilution or dialysis approaches for suppressing protein aggregation is very important in the industrial field. In this paper, a modeling approach is introduced and employed that enables a compact and cost-effective method for on-chip refolding process. The innovative aspect of the presented refolding method is incorporation dialysis and dilution. Dilution-dialysis microfluidic chip (DDMC) increases productivity folding of proteins with the gradual reduction of the amount of urea. It has shown the potential of DDMC for performing refolding of protein trials. The principles of the microfluidic device detailed in this paper are to produce protein on the dilution with slow mixing through diffusion of a denatured protein solution and stepwise dialysis of a refolding buffer flowing together and the flow regime is creeping flow. The operation of DDMC was modeled in two dimensions. This system simulated by COMSOL Multiphysics Modeling Software. The simulation results for a microfluidic refolding chip showed that DDMC was deemed to be perfectly suitable for control decreasing urea in the fluid model. The DDMC was validated through an experimental study. According to the results, refolding efficiency of denaturant Hen egg white lysozyme (HEWL) (EC 3.2.1.17) used as a model protein was improved. Regard to the remaining activity test, it was increased from 42.6 in simple dilution to 93.7 using DDMC.

摘要

基于微流控原理的微型化系统广泛应用于生化和生物医学等各个领域。为了正确使用这些微流控设备,需要系统的设计过程,基于数学模拟。在高浓度的变性剂(如尿素)和还原剂存在下,溶液中的聚集蛋白(如包涵体)发生变性。从重组蛋白的包涵体中获得天然蛋白质的复性方法对于工业领域非常重要,这依赖于变性剂稀释或透析方法来抑制蛋白质聚集。本文介绍并采用了一种建模方法,为芯片上复性过程提供了一种紧凑且经济高效的方法。所提出的复性方法的创新之处在于结合了透析和稀释。稀释-透析微流控芯片(DDMC)通过逐渐减少尿素的量来提高蛋白质折叠的产量。它已经显示出 DDMC 用于进行蛋白质复性试验的潜力。本文详细介绍的微流控设备的原理是通过扩散变性蛋白溶液和一起流动的分步透析复性缓冲液的缓慢混合来产生蛋白,流动状态为蠕动流。DDMC 的操作在二维空间中进行建模。该系统通过 COMSOL Multiphysics 建模软件进行模拟。微流控复性芯片的模拟结果表明,DDMC 非常适合控制流体模型中尿素的减少。通过实验研究对 DDMC 进行了验证。根据结果,用作模型蛋白的变性鸡卵清溶菌酶(HEWL)(EC 3.2.1.17)的复性效率得到了提高。从简单稀释的剩余活性测试的 42.6%提高到使用 DDMC 的 93.7%。

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