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芽孢杆菌属菌株UFRGS-B20(一种烃降解菌)的基因组序列草图

Draft Genome Sequence of Bacillus sp. Strain UFRGS-B20, a Hydrocarbon Degrader.

作者信息

Dörr de Quadros Patricia, Fulthorpe Roberta, Saati Rosemary, Cerqueira Vanessa, Bento Fátima Menezes

机构信息

Department of Environmental Microbiology, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil

Department of Physical and Environmental Sciences, University of Toronto, Toronto, Ontario, Canada.

出版信息

Genome Announc. 2018 Feb 22;6(8):e00052-18. doi: 10.1128/genomeA.00052-18.

DOI:10.1128/genomeA.00052-18
PMID:29472329
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5824004/
Abstract

sp. strain UFRGS-B20 was isolated in 2012 from Brazilian land-farming soil contaminated with petrochemical oily sludge. This strain was subjected to hydrocarbon biodegradation tests, showing degradation rates of up to 60%. Here, we present the 6.82-Mb draft genome sequence of the strain, which contains 2,178 proteins with functional assignments.

摘要

菌株UFRGS-B20于2012年从受石化油泥污染的巴西土地耕作土壤中分离得到。该菌株进行了烃类生物降解测试,降解率高达60%。在此,我们展示了该菌株682万个碱基对的基因组草图序列,其中包含2178个具有功能注释的蛋白质。

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本文引用的文献

1
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
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Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.Minimap和miniasm:用于有噪声长序列的快速映射和从头组装。
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