Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Department of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Mol Psychiatry. 2019 Jan;24(1):49-66. doi: 10.1038/s41380-018-0029-1. Epub 2018 Feb 26.
The development of human-induced pluripotent stem cells (hiPSCs) has made possible patient-specific modeling across the spectrum of human disease. Here, we discuss recent advances in psychiatric genomics and post-mortem studies that provide critical insights concerning cell-type composition and sample size that should be considered when designing hiPSC-based studies of complex genetic disease. We review recent hiPSC-based models of SZ, in light of our new understanding of critical power limitations in the design of hiPSC-based studies of complex genetic disorders. Three possible solutions are a movement towards genetically stratified cohorts of rare variant patients, application of CRISPR technologies to engineer isogenic neural cells to study the impact of common variants, and integration of advanced genetics and hiPSC-based datasets in future studies. Overall, we emphasize that to advance the reproducibility and relevance of hiPSC-based studies, stem cell biologists must contemplate statistical and biological considerations that are already well accepted in the field of genetics. We conclude with a discussion of the hypothesis of biological convergence of disease-through molecular, cellular, circuit, and patient level phenotypes-and how this might emerge through hiPSC-based studies.
人类诱导多能干细胞(hiPSCs)的发展使得对人类疾病谱的患者特异性建模成为可能。在这里,我们讨论了精神病学基因组学和死后研究的最新进展,这些进展为设计基于 hiPSC 的复杂遗传疾病研究时应考虑的细胞类型组成和样本量提供了关键的见解。我们根据我们对设计基于 hiPSC 的复杂遗传疾病研究中的关键功率限制的新理解,回顾了最近基于 hiPSC 的 SZ 模型。有三种可能的解决方案:一是朝着罕见变异患者的遗传分层队列发展,二是应用 CRISPR 技术工程同基因神经细胞来研究常见变异的影响,三是在未来的研究中整合先进的遗传学和基于 hiPSC 的数据集。总的来说,我们强调,为了提高基于 hiPSC 的研究的可重复性和相关性,干细胞生物学家必须考虑到遗传领域已经被广泛接受的统计和生物学考虑因素。最后,我们讨论了通过分子、细胞、回路和患者水平的表型来实现疾病的生物学趋同的假说,以及如何通过基于 hiPSC 的研究来实现这一假说。