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用于鉴定食源性酵母的多片段熔解分析系统(MFMAS)的评估

Assessment of Multi Fragment Melting Analysis System (MFMAS) for the Identification of Food-Borne Yeasts.

作者信息

Kesmen Zülal, Büyükkiraz Mine E, Özbekar Esra, Çelik Mete, Özkök F Özge, Kılıç Özge, Çetin Bülent, Yetim Hasan

机构信息

Food Engineering Department, Faculty of Engineering, Erciyes University, Kayseri, Turkey.

Computer Engineering Department, Faculty of Engineering, Erciyes University, Kayseri, Turkey.

出版信息

Curr Microbiol. 2018 Jun;75(6):716-725. doi: 10.1007/s00284-018-1437-9. Epub 2018 Feb 26.

Abstract

Multi Fragment Melting Analysis System (MFMAS) is a novel approach that was developed for the species-level identification of microorganisms. It is a software-assisted system that performs concurrent melting analysis of 8 different DNA fragments to obtain a fingerprint of each strain analyzed. The identification is performed according to the comparison of these fingerprints with the fingerprints of known yeast species recorded in a database to obtain the best possible match. In this study, applicability of the yeast version of the MFMAS (MFMAS-yeast) was evaluated for the identification of food-associated yeast species. For this purpose, in this study, a total of 145 yeast strains originated from foods and beverages and 19 standard yeast strains were tested. The DNAs isolated from these yeast strains were analyzed by the MFMAS, and their species were successfully identified with a similarity rate of 95% or higher. It was shown that the strains belonged to 43 different yeast species that are widely found in the foods. A clear discrimination was also observed in the phylogenetically related species. In conclusion, it might be suggested that the MFMAS-yeast seems to be a highly promising approach for a rapid, accurate, and one-step identification of the yeasts isolated from food products and/or their processing environments.

摘要

多片段熔解分析系统(MFMAS)是一种为微生物物种水平鉴定而开发的新方法。它是一个软件辅助系统,可对8个不同的DNA片段进行同步熔解分析,以获得每个被分析菌株的指纹图谱。通过将这些指纹图谱与数据库中记录的已知酵母物种的指纹图谱进行比较来进行鉴定,以获得最佳匹配。在本研究中,评估了酵母版MFMAS(MFMAS-酵母)在鉴定食品相关酵母物种方面的适用性。为此,本研究共测试了145株源自食品和饮料的酵母菌株以及19株标准酵母菌株。用MFMAS分析从这些酵母菌株中分离的DNA,并以95%或更高的相似率成功鉴定了它们的物种。结果表明,这些菌株属于在食品中广泛发现的43种不同酵母物种。在系统发育相关物种中也观察到了明显的区分。总之,可能有人认为,MFMAS-酵母似乎是一种非常有前景的方法,可用于快速、准确且一步鉴定从食品及其加工环境中分离出的酵母。

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