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草酰肼氟衍生物中分子内氢键对构象倾向的偏好:核磁共振、分子动力学、量子拓扑原子分子理论和非共价相互作用研究

Intramolecular Hydrogen Bonding Appetency for Conformational Penchants in Oxalohydrazide Fluoro Derivatives: NMR, MD, QTAIM, and NCI Studies.

作者信息

Lakshmipriya A, Chaudhary Madhusudan, Mogurampelly Santosh, Klein Michael L, Suryaprakash N

机构信息

NMR Research Centre , Indian Institute of Science , Bangalore , Karnataka 560012 , India.

Solid State and Structural Chemistry Unit , Indian Institute of Science , Bangalore , Karnataka 560012 , India.

出版信息

J Phys Chem A. 2018 Mar 15;122(10):2703-2713. doi: 10.1021/acs.jpca.8b00913. Epub 2018 Mar 6.

DOI:10.1021/acs.jpca.8b00913
PMID:29488767
Abstract

The conformational stability of synthesized diphenyloxalohydrazide and dibenzoyloxalohydrazide fluoro derivatives has been investigated by extensive NMR studies that are ascertained by various levels of theoretical calculations. Two-dimensional H-F HOESY NMR experiments revealed the close spatial proximity between two NMR-active nuclei, confirming the hydrogen bond (HB)-mediated interaction between them, further aiding in establishing the probable stable conformations of these molecules. The relaxed potential energy scan disclosed the energy-minimized most stable structure among the several possible multiple conformations, which is in concurrence with NMR interpretations. Atomistic molecular dynamics simulations have been employed to unequivocally establish the conformational stability and the nature of HB formation at varied temperatures. With the possibility of occurrence of a number of probable conformations, the percentage of occurrences of different types of HBs in them was determined by MD simulations. Their population analysis was carried out using a Boltzmann distribution, in addition to deriving their Gibbs free energies. The molecular interactions governing the stable conformations have not only been ascertained by experimental NMR interpretations but also corroborated by other theoretical computations, viz., quantum theory of atoms in molecules (QTAIM) and noncovalent interaction (NCI).

摘要

通过广泛的核磁共振研究,并结合不同层次的理论计算,对合成的二苯基草酰肼和二苯甲酰基草酰肼氟衍生物的构象稳定性进行了研究。二维H-F HOESY核磁共振实验揭示了两个具有核磁共振活性的原子核之间紧密的空间接近性,证实了它们之间存在氢键(HB)介导的相互作用,进一步有助于确定这些分子可能的稳定构象。松弛势能扫描揭示了几种可能的多重构象中能量最小化的最稳定结构,这与核磁共振的解释一致。采用原子分子动力学模拟明确了不同温度下的构象稳定性以及氢键形成的性质。由于可能存在多种可能的构象,通过分子动力学模拟确定了其中不同类型氢键出现的百分比。除了推导它们的吉布斯自由能外,还使用玻尔兹曼分布对它们进行了布居分析。不仅通过实验核磁共振解释确定了控制稳定构象的分子间相互作用,还通过其他理论计算,即分子中的原子量子理论(QTAIM)和非共价相互作用(NCI)得到了证实。

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