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利用介导插入诱变测序来鉴定参与纤维素酶产生的新型基因。

The use of -mediated insertional mutagenesis sequencing to identify novel genes of involved in cellulase production.

作者信息

Fan Chao, Xu Xinxin, Song Liya, Guan Weishi, Li Jinyang, Liu Bo, Shi Pengjun, Zhang Wei

机构信息

1Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian District, Beijing, 100081 China.

2Beijing Key Lab of Plant Resource Research and Development, Beijing Technology and Business University, No.11 Fucheng Road, Haidian District, Beijing, 100048 China.

出版信息

3 Biotech. 2018 Mar;8(3):153. doi: 10.1007/s13205-018-1166-6. Epub 2018 Feb 27.

Abstract

A transfer DNA (T-DNA)-tagged mutant library of was screened for mutants with altered cellulase production using the plate-clearing zone assay. Three selected mutants (5-A7, 5-C6, and 13-B7) exhibited significantly depressed FPase, CMCase and xylanase activities compared with the wild-type strain upon shake-flask fermentation, while the pNPCase and pNPGase activities of the three mutants were relatively higher than those of the parental strain. Combined with the results of SDS-PAGE and mass spectrometry, we suggest that expression of the CMCases Cel6B, Cel7B, CMC3, and XynA/B/C was reduced in the mutant strains. Twelve putative T-DNA insertion sites were identified in the three mutants via -mediated insertional mutagenesis sequencing (AIM-Seq). Bioinformatics analysis suggested that a putative dolichyl pyrophosphate phosphatase, two hypothetical proteins encoding genes of unknown function, and/or nine intergenic fragments may be involved in cellulase and hemicellulase production by . This provides promising new candidate genes relevant to cellulase production by the fungus, which will be crucial not only for our understanding of the molecular mechanism underlying cellulase production, but also for strain improvement.

摘要

使用平板透明圈测定法,对一个携带转移DNA(T-DNA)标签的突变体文库进行筛选,以寻找纤维素酶产量发生改变的突变体。在摇瓶发酵时,与野生型菌株相比,三个选定的突变体(5-A7、5-C6和13-B7)表现出显著降低的滤纸酶(FPase)、羧甲基纤维素酶(CMCase)和木聚糖酶活性,而这三个突变体的对硝基苯磷酸二酯酶(pNPCase)和对硝基苯β-D-葡萄糖苷酶(pNPGase)活性相对高于亲本菌株。结合十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)和质谱分析结果,我们认为突变菌株中羧甲基纤维素酶Cel6B、Cel7B、CMCase3和木聚糖酶XynA/B/C的表达降低。通过基于聚合酶链反应(PCR)介导的插入诱变测序(AIM-Seq),在这三个突变体中鉴定出了12个假定的T-DNA插入位点。生物信息学分析表明,一种假定的多萜焦磷酸磷酸酶、两个功能未知的假定蛋白编码基因和/或九个基因间片段可能参与了该菌纤维素酶和半纤维素酶的产生。这为该真菌产生纤维素酶提供了有前景的新候选基因,这不仅对于我们理解纤维素酶产生的分子机制至关重要,而且对于菌株改良也至关重要。

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