Rampelli Simone, Turroni Silvia
Unit of Microbial Ecology of Health, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.
Methods Mol Biol. 2018;1746:181-185. doi: 10.1007/978-1-4939-7683-6_14.
ViromeScan is an innovative metagenomic analysis tool that allows the viral community characterization in terms of taxonomy from raw data of metagenomics sequencing. It efficiently denoises samples from reads of other microorganisms. Users can adopt the same shotgun metagenomic sequencing data to fully characterize complex microbial ecosystems, including bacteria and viruses. Here we apply ViromeScan pipeline to some examples, thus illustrating the processes computed from raw data to the final output.
病毒组扫描（ViromeScan）是一种创新的宏基因组分析工具，它能够根据宏基因组测序的原始数据，从分类学角度对病毒群落进行特征描述。它能有效地去除来自其他微生物读数的样本噪声。用户可以采用相同的鸟枪法宏基因组测序数据，全面描述包括细菌和病毒在内的复杂微生物生态系统。在这里，我们将病毒组扫描流程应用于一些示例，从而说明从原始数据到最终输出的计算过程。
