中性进化的肽为从头基因进化提供了基础。
Translation of neutrally evolving peptides provides a basis for de novo gene evolution.
机构信息
Evolutionary Genomics Group, Research Programme on Biomedical Informatics, Hospital del Mar Research Institute, Universitat Pompeu Fabra, Barcelona, Spain.
Computer Sciences Department, Universitat Politècnica de Catalunya , Barcelona, Spain.
出版信息
Nat Ecol Evol. 2018 May;2(5):890-896. doi: 10.1038/s41559-018-0506-6. Epub 2018 Mar 19.
Accumulating evidence indicates that some protein-coding genes have originated de novo from previously non-coding genomic sequences. However, the processes underlying de novo gene birth are still enigmatic. In particular, the appearance of a new functional protein seems highly improbable unless there is already a pool of neutrally evolving peptides that are translated at significant levels and that can at some point acquire new functions. Here, we use deep ribosome-profiling sequencing data, together with proteomics and single nucleotide polymorphism information, to search for these peptides. We find hundreds of open reading frames that are translated and that show no evolutionary conservation or selective constraints. These data suggest that the translation of these neutrally evolving peptides may be facilitated by the chance occurrence of open reading frames with a favourable codon composition. We conclude that the pervasive translation of the transcriptome provides plenty of material for the evolution of new functional proteins.
越来越多的证据表明,一些蛋白质编码基因是从头起源于以前的非编码基因组序列。然而,新基因产生的过程仍然是个谜。特别是,如果没有大量中性进化的肽,这些肽在翻译时有显著的水平,并且可以在某个时候获得新的功能,那么新的功能蛋白的出现似乎是极不可能的。在这里,我们使用深度核糖体分析测序数据,结合蛋白质组学和单核苷酸多态性信息来寻找这些肽。我们发现了数百个被翻译且没有进化保守或选择限制的开放阅读框。这些数据表明,这些中性进化肽的翻译可能是由于具有有利密码子组成的开放阅读框的偶然出现而得到促进的。我们的结论是,转录组的普遍翻译为新功能蛋白的进化提供了大量的物质。