J Chem Theory Comput. 2018 May 8;14(5):2684-2695. doi: 10.1021/acs.jctc.7b01020. Epub 2018 Apr 2.
In this study, we assess the influence of solvation on the accuracy and reliability of isotropic nuclear magnetic shielding calculations for amino acids in comparison to experimental data. We focus particularly on the performance of solvation methods for different protonation states, as biological molecules occur almost exclusively in aqueous solution and are subject to protonation with pH. We identify significant shortcomings of current implicit solvent models and present a hybrid solvation approach that improves agreement with experimental data by taking into account the presence of direct interactions between amino acid protonation state and water molecules.
在这项研究中,我们评估了溶剂化对与实验数据相比,计算氨基酸各向同性核磁共振屏蔽的准确性和可靠性的影响。我们特别关注不同质子化状态的溶剂化方法的性能,因为生物分子几乎只存在于水溶液中,并受到 pH 值的质子化影响。我们确定了当前隐式溶剂模型的显著缺点,并提出了一种混合溶剂化方法,通过考虑氨基酸质子化状态与水分子之间直接相互作用的存在,提高了与实验数据的一致性。