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一种通过第一性原理计算对客体-主体相互作用进行基准测试的系统方案:捕获笼型水合物中的 CO。

A Systematic Protocol for Benchmarking Guest-Host Interactions by First-Principles Computations: Capturing CO in Clathrate Hydrates.

机构信息

Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006, Madrid, Spain.

Departamento de Física, Universidad Nacional de Colombia, Calle 26, Cra 39, Edificio, 404, Bogotá, Colombia.

出版信息

Chemistry. 2018 Jul 2;24(37):9353-9363. doi: 10.1002/chem.201800497. Epub 2018 Jun 7.

Abstract

Clathrate hydrates of CO have been proposed as potential molecular materials in tackling important environmental problems related to greenhouse gases capture and storage. Despite the increasing interest in such hydrates and their technological applications, a molecular-level understanding of their formation and properties is still far from complete. Modeling interactions is a challenging and computationally demanding task, essential to reliably determine molecular properties. First-principles calculations for the CO guest in all sI, sII, and sH clathrate cages were performed, and the nature of the guest-host interactions, dominated by both hydrogen-bond and van der Waals forces, was systematically investigated. Different families of density functionals, as well as pairwise CO @H O model potentials versus wavefunction-based quantum approaches were studied for CO clathrate-like systems. Benchmark energies for new distance-dependent datasets, consisting of potential energy curves sampling representative configurations of the systems at the repulsive, near-equilibrium, and asymptotic/long-range regions of the full-dimensional surface, were generated, and a general protocol was proposed to assess the accuracy of such conventional and modern approaches at minimum and non-minimum orientations. Our results show that dispersion interactions are important in the guest-host stabilization energies of such clathrate cages, and the encapsulation of the CO into guest-free clathrate cages is always energetically favorable. In addition, the orientation of CO inside each cage was explored, and the ability of current promising approaches to accurately describe non-covalent CO @H O guest-host interactions in sI, sII, and sH clathrates was discussed, providing information for their applicability to future multiscale computer simulations.

摘要

CO 的笼形水合物已被提议作为解决与温室气体捕获和储存相关的重要环境问题的潜在分子材料。尽管人们对这种水合物及其技术应用越来越感兴趣,但对其形成和性质的分子水平理解仍远未完成。建模相互作用是一项具有挑战性和计算要求高的任务,对于可靠地确定分子性质至关重要。对所有 sI、sII 和 sH 笼形水合物笼中的 CO 客体进行了第一性原理计算,并系统地研究了以氢键和范德华力为主导的客体-主体相互作用的性质。研究了不同的密度泛函家族,以及 CO @H O 模型对与基于波函数的量子方法相比,用于 CO 笼状体系。为新的距离相关数据集生成了基准能量,这些数据集由在全维表面的排斥、近平衡和渐近/长程区域中采样系统代表性构型的势能曲线组成,并提出了一种通用协议来评估这种传统和现代方法在最小和非最小取向下的准确性。我们的结果表明,色散相互作用在这种笼形水合物笼中客体-主体稳定能中很重要,并且 CO 被封装在无客体的笼形水合物笼中总是能量有利的。此外,还探索了 CO 在每个笼中的取向,并讨论了当前有前途的方法在准确描述 sI、sII 和 sH 笼状化合物中非共价 CO @H O 客体-主体相互作用的能力,为它们在未来多尺度计算机模拟中的适用性提供了信息。

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