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基于相子的三维单分子定位显微镜 (pSMLM-3D):使用标准 CPU 实现 MHz 定位速率的算法。

Phasor based single-molecule localization microscopy in 3D (pSMLM-3D): An algorithm for MHz localization rates using standard CPUs.

机构信息

Laboratory of Biophysics, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

Faculty of Applied Sciences, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, The Netherlands.

出版信息

J Chem Phys. 2018 Mar 28;148(12):123311. doi: 10.1063/1.5005899.

Abstract

We present a fast and model-free 2D and 3D single-molecule localization algorithm that allows more than 3 × 10 localizations per second to be calculated on a standard multi-core central processing unit with localization accuracies in line with the most accurate algorithms currently available. Our algorithm converts the region of interest around a point spread function to two phase vectors (phasors) by calculating the first Fourier coefficients in both the x- and y-direction. The angles of these phasors are used to localize the center of the single fluorescent emitter, and the ratio of the magnitudes of the two phasors is a measure for astigmatism, which can be used to obtain depth information (z-direction). Our approach can be used both as a stand-alone algorithm for maximizing localization speed and as a first estimator for more time consuming iterative algorithms.

摘要

我们提出了一种快速且无模型的 2D 和 3D 单分子定位算法,它允许在标准多核中央处理器上每秒计算超过 3×10 次的定位,并且具有与当前最准确算法相当的定位精度。我们的算法通过计算 x 和 y 方向上的前两个傅里叶系数,将点扩散函数周围的感兴趣区域转换为两个相位向量(phasors)。这些phasors 的角度用于定位单荧光发射器的中心,并且两个phasors 的幅度比是彗差的度量,可以用于获得深度信息(z 方向)。我们的方法既可以作为最大化定位速度的独立算法,也可以作为更耗时的迭代算法的初始估计器。

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