1Departments of Infectious Diseases and Microbiology,Royal Prince Alfred Hospital,Sydney,New South Wales,Australia.
3Infection Control Department,Royal Prince Alfred Hospital,Sydney,New South Wales,Australia.
Infect Control Hosp Epidemiol. 2018 Jun;39(6):668-675. doi: 10.1017/ice.2018.29. Epub 2018 Apr 3.
OBJECTIVETo describe the transmission dynamics of the emergence and persistence of vanA vancomycin-resistant enterococcus (VRE) in an intensive care unit (ICU) using whole-genome sequencing of patient and environmental isolates.DESIGNRetrospective cohort study.SETTINGICU in a tertiary referral center.PARTICIPANTSPatients admitted to the ICU over an 11-month period.METHODS VanA VRE isolated from patients (n=31) were sequenced using the Illumina MiSeq platform. Environmental samples from bed spaces, equipment, and waste rooms were collected. All vanA VRE-positive environmental samples (n=14) were also sequenced. Data were collected regarding patient ward and bed movements.RESULTSThe 31 patient vanA VRE isolates were from screening (n=19), urine (n=4), bloodstream (n=3), skin/wound (n=3), and intra-abdominal (n=2) sources. The phylogeny from sequencing data confirmed several VRE clusters, with 1 group accounting for 38 of 45 isolates (84%). Within this cluster, cross-transmission was extensive and complex across the ICU. Directionality indicated that colonized patients contaminated environmental sites. Similarly, environmental sources not only led to patient colonization but also to infection. Notably, shared equipment acted as a conduit for transmission between different ICU areas. Infected patients, however, were not linked to further VRE transmission.CONCLUSIONSGenomic sequencing confirmed a predominantly clonal outbreak of VRE with complex transmission dynamics. The environmental reservoir, particularly from shared equipment, played a key role in ongoing VRE spread. This study provides evidence to support the use of multifaceted strategies, with an emphasis on measures to reduce bacterial burden in the environment, for successful VRE control.Infect Control Hosp Epidemiol 2018;39:668-675.
目的 使用患者和环境分离株的全基因组测序,描述重症监护病房(ICU)中 vanA 万古霉素耐药肠球菌(VRE)出现和持续存在的传播动力学。
设计 回顾性队列研究。
地点 三级转诊中心的 ICU。
参与者 在 11 个月期间入住 ICU 的患者。
方法 使用 Illumina MiSeq 平台对患者(n=31)分离的 vanA VRE 进行测序。收集来自床位、设备和废物室的环境样本。所有 vanA VRE 阳性环境样本(n=14)也进行测序。收集有关患者病房和床位移动的数据。
结果 31 例患者 vanA VRE 分离株来自筛查(n=19)、尿液(n=4)、血流(n=3)、皮肤/伤口(n=3)和腹腔(n=2)来源。测序数据的系统发育证实了几个 VRE 簇,其中 1 个簇占 45 个分离株中的 38 个(84%)。在这个簇中,ICU 内广泛而复杂的交叉传播。方向性表明定植患者污染了环境部位。同样,环境来源不仅导致患者定植,还导致感染。值得注意的是,共用设备成为 ICU 不同区域之间传播的媒介。然而,感染患者与进一步的 VRE 传播无关。
结论 基因组测序证实了 VRE 的主要克隆暴发,具有复杂的传播动力学。环境库,特别是来自共用设备的环境库,在 VRE 的持续传播中起着关键作用。本研究为支持使用多方面的策略提供了证据,重点是减少环境中细菌负荷的措施,以成功控制 VRE。