College of Nanoscale Science, State University of New York (SUNY) Polytechnic Institute, Albany, New York, U.S.A.
Division of Solid State Physics, NanoLund, Lund University, Lund, Sweden.
J Microsc. 2018 Jul;271(1):69-83. doi: 10.1111/jmi.12696. Epub 2018 Apr 6.
Hyperspectral imaging (HSI) and classification are established methods that are being applied in new ways to the analysis of nanoscale materials in a variety of matrices. Typically, enhanced darkfield microscopy (EDFM)-based HSI data (also known as image datacubes) are collected in the wavelength range of 400-1000 nm for each pixel in a datacube. Utilising different spectral library (SL) creation methods, spectra from pixels in the datacube corresponding to known materials can be collected into reference spectral libraries (RSLs), which can be used to classify materials in datacubes of experimental samples using existing classification algorithms. In this study, EDFM-HSI was used to visualise and analyse industrial cerium oxide (CeO ; ceria) nanoparticles (NPs) in rat lung tissues and in aqueous suspension. Rats were exposed to ceria NPs via inhalation, mimicking potential real-world occupational exposures. The lung tissues were histologically prepared: some tissues were stained with hematoxylin and eosin (H&E) and some were left unstained. The goal of this study was to determine how HSI and classification results for ceria NPs were influenced by (1) the use of different RSL creation and classification methods and (2) the application of those methods to samples in different matrices (stained tissue, unstained tissue, or aqueous solution). Three different RSL creation methods - particle filtering (PF), manual selection, and spectral hourglass wizard (SHW) - were utilised to create the RSLs of known materials in unstained and stained tissue, and aqueous suspensions, which were then used to classify the NPs in the different matrices. Two classification algorithms - spectral angle mapper (SAM) and spectral feature fitting (SFF) - were utilised to determine the presence or absence of ceria NPs in each sample. The results from the classification algorithms were compared to determine how each influenced the classification results for samples in different matrices. The results showed that sample matrix and sample preparation significantly influenced the NP classification thresholds in the complex matrices. Moreover, considerable differences were observed in the classification results when utilising each RSL creation and classification method for each type of sample. Results from this study illustrate the importance of appropriately selecting HSI algorithms based on specific material and matrix characteristics in order to obtain optimal classification results. As HSI is increasingly utilised for NP characterisation for clinical, environmental and health and safety applications, this investigation is important for further refining HSI protocols while ensuring appropriate data collection and analysis.
高光谱成像 (HSI) 和分类是已建立的方法,正在以新的方式应用于分析各种基质中的纳米材料。通常,在每个数据立方体的像素中,在 400-1000nm 的波长范围内收集基于增强暗场显微镜 (EDFM) 的 HSI 数据(也称为图像数据立方体)。利用不同的光谱库 (SL) 创建方法,可以将数据立方体中对应于已知材料的像素的光谱收集到参考光谱库 (RSL) 中,然后可以使用现有的分类算法对实验样品的数据立方体中的材料进行分类。在这项研究中,使用 EDFM-HSI 来可视化和分析大鼠肺组织和水悬浮液中的工业氧化铈 (CeO; 氧化铈) 纳米颗粒 (NPs)。大鼠通过吸入暴露于氧化铈 NPs,模拟潜在的现实世界职业暴露。对肺组织进行组织学准备:一些组织用苏木精和伊红 (H&E) 染色,一些组织未染色。本研究的目的是确定 HSI 和分类结果对 (1) 使用不同的 RSL 创建和分类方法以及 (2) 将这些方法应用于不同基质(染色组织、未染色组织或水溶液)中的样品的影响。使用三种不同的 RSL 创建方法 - 颗粒过滤 (PF)、手动选择和光谱沙漏向导 (SHW) - 创建未染色和染色组织以及水悬浮液中已知材料的 RSL,然后使用这些 RSL 对不同基质中的 NPs 进行分类。使用两种分类算法 - 光谱角映射 (SAM) 和光谱特征拟合 (SFF) - 来确定每个样品中是否存在氧化铈 NPs。比较分类算法的结果,以确定每种方法如何影响不同基质中样品的分类结果。结果表明,样品基质和样品制备显着影响复杂基质中 NP 分类阈值。此外,当为每种类型的样品使用每种 RSL 创建和分类方法时,观察到分类结果存在相当大的差异。本研究的结果表明,为了获得最佳的分类结果,根据特定的材料和基质特性,适当选择 HSI 算法非常重要。随着 HSI 越来越多地用于临床、环境和健康与安全应用中的 NP 特性描述,这项研究对于进一步细化 HSI 协议同时确保适当的数据收集和分析非常重要。