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有限环境中模拟原始细胞两亲性囊泡的复制表现出复杂的行为,包括高后代变异性和竞争。

Replication of Simulated Prebiotic Amphiphilic Vesicles in a Finite Environment Exhibits Complex Behavior That Includes High Progeny Variability and Competition.

机构信息

1 Institute for Genomic Biology, University of Illinois at Urbana-Champaign , Urbana, Illinois, USA.

2 Department of Cell Biology and Neuroscience, University of California , Riverside, California, USA.

出版信息

Astrobiology. 2018 Apr;18(4):419-430. doi: 10.1089/ast.2016.1615. Epub 2018 Mar 16.

Abstract

We studied the simulated replication and growth of prebiotic vesicles composed of 140 phospholipids and cholesterol using our R-GARD (Real Graded Autocatalysis Replication Domain) formalism that utilizes currently extant lipids that have known rate constants of lipid-vesicle interactions from published experimental data. R-GARD normally modifies kinetic parameters of lipid-vesicle interactions based on vesicle composition and properties. Our original R-GARD model tracked the growth and division of one vesicle at a time in an environment with unlimited lipids at a constant concentration. We explore here a modified model where vesicles compete for a finite supply of lipids. We observed that vesicles exhibit complex behavior including initial fast unrestricted growth, followed by intervesicle competition for diminishing resources, then a second growth burst driven by better-adapted vesicles, and ending with a final steady state. Furthermore, in simulations without kinetic parameter modifications ("invariant kinetics"), the initial replication was an order of magnitude slower, and vesicles' composition variability at the final steady state was much lower. The complex kinetic behavior was not observed either in the previously published R-GARD simulations or in additional simulations presented here with only one lipid component. This demonstrates that both a finite environment (inducing selection) and multiple components (providing variation for selection to act upon) are crucial for portraying evolution-like behavior. Such properties can improve survival in a changing environment by increasing the ability of early protocellular entities to respond to rapid environmental fluctuations likely present during abiogenesis both on Earth and possibly on other planets. This in silico simulation predicts that a relatively simple in vitro chemical system containing only lipid molecules might exhibit properties that are relevant to prebiotic processes. Key Words: Phospholipid vesicles-Prebiotic compartments-Prebiotic vesicle competition-Prebiotic vesicle variability. Astrobiology 18, 419-430.

摘要

我们使用 R-GARD(真实分级自催化复制域)形式主义研究了由 140 种磷脂和胆固醇组成的前生物囊泡的模拟复制和生长,该形式主义利用了目前已知的脂质-囊泡相互作用的速率常数,这些速率常数来自已发表的实验数据。R-GARD 通常根据囊泡组成和性质修改脂质-囊泡相互作用的动力学参数。我们最初的 R-GARD 模型在具有恒定浓度的无限脂质环境中一次跟踪一个囊泡的生长和分裂。我们在这里探索了一种修改后的模型,其中囊泡争夺有限的脂质供应。我们观察到囊泡表现出复杂的行为,包括初始快速无限制的生长,然后是囊泡之间为减少资源而竞争,然后是由适应性更好的囊泡驱动的第二次生长爆发,最后达到最终的稳定状态。此外,在没有动力学参数修改的模拟中(“不变动力学”),初始复制要慢一个数量级,并且在最终稳定状态下囊泡的组成可变性要低得多。这种复杂的动力学行为既没有在之前发表的 R-GARD 模拟中观察到,也没有在本文中仅使用一种脂质成分的其他模拟中观察到。这表明,有限的环境(诱导选择)和多种成分(为选择提供变化)对于描绘类似进化的行为都是至关重要的。这些特性可以通过提高早期原细胞实体对快速环境波动的响应能力来提高在变化环境中的生存能力,这种快速环境波动可能在地球和其他行星上的生命起源过程中都存在。这种计算机模拟预测,一个相对简单的体外化学系统,仅包含脂质分子,可能表现出与前生物过程相关的特性。关键词:磷脂囊泡-前生物隔室-前生物囊泡竞争-前生物囊泡可变性。天体生物学 18, 419-430。

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