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人源 INO80-核小体复合物的结构与调控。

Structure and regulation of the human INO80-nucleosome complex.

机构信息

Section of Structural Biology, Dept. Medicine, Imperial College London, London, UK.

出版信息

Nature. 2018 Apr;556(7701):391-395. doi: 10.1038/s41586-018-0021-6. Epub 2018 Apr 11.

Abstract

Access to DNA within nucleosomes is required for a variety of processes in cells including transcription, replication and repair. Consequently, cells encode multiple systems that remodel nucleosomes. These complexes can be simple, involving one or a few protein subunits, or more complicated multi-subunit machines . Biochemical studies have placed the motor domains of several chromatin remodellers in the superhelical location 2 region of the nucleosome. Structural studies of yeast Chd1 and Snf2-a subunit in the complex with the capacity to remodel the structure of chromatin (RSC)-in complex with nucleosomes have provided insights into the basic mechanism of nucleosome sliding performed by these complexes. However, how larger, multi-subunit remodelling complexes such as INO80 interact with nucleosomes and how remodellers carry out functions such as nucleosome sliding , histone exchange and nucleosome spacing remain poorly understood. Although some remodellers work as monomers , others work as highly cooperative dimers. Here we present the structure of the human INO80 chromatin remodeller with a bound nucleosome, which reveals that INO80 interacts with nucleosomes in a previously undescribed manner: the motor domains are located on the DNA at the entry point to the nucleosome, rather than at superhelical location 2. The ARP5-IES6 module of INO80 makes additional contacts on the opposite side of the nucleosome. This arrangement enables the histone H3 tails of the nucleosome to have a role in the regulation of the activities of the INO80 motor domain-unlike in other characterized remodellers, for which H4 tails have been shown to regulate the motor domains.

摘要

核小体内部的 DNA 对于细胞中的多种过程是必需的,包括转录、复制和修复。因此,细胞编码了多种重塑核小体的系统。这些复合物可以是简单的,涉及一个或几个蛋白质亚基,也可以是更复杂的多亚基机器。生化研究已经将几种染色质重塑酶的马达结构域定位在核小体的超螺旋位置 2 区域。酵母 Chd1 和 Snf2-a 亚基与具有重塑染色质结构能力的复合物(RSC)与核小体的结构研究提供了对这些复合物进行核小体滑动基本机制的深入了解。然而,像 INO80 这样更大的、多亚基重塑复合物如何与核小体相互作用,以及重塑酶如何执行核小体滑动、组蛋白交换和核小体间隔等功能仍知之甚少。尽管有些重塑酶作为单体起作用,而其他则作为高度协作的二聚体起作用。在这里,我们展示了与人 INO80 染色质重塑酶结合的核小体的结构,该结构揭示了 INO80 以以前未描述的方式与核小体相互作用:马达结构域位于核小体进入 DNA 的入口处,而不是超螺旋位置 2。INO80 的 ARP5-IES6 模块在核小体的相反侧上形成额外的接触。这种排列方式使核小体的组蛋白 H3 尾巴在 INO80 马达结构域的活性调节中发挥作用——与其他已表征的重塑酶不同,后者已显示 H4 尾巴调节马达结构域。

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