Lost in translation: The 3'-UTR of as an ancient long noncoding RNA.

BACKGROUND AND OBJECTIVES

The insulin-like growth factor (IGF) signaling system is a major arena of intragenomic conflict over embryonic growth between imprinted genes of maternal and paternal origin and the IGF type 1 receptor (IGF1R) promotes proliferation of many human cancers. The 3'-untranslated region (3'-UTR) of the mouse mRNA is targeted by miR-675-3p derived from the imprinted long noncoding RNA. We undertook a comparative sequence analysis of vertebrate 3'-UTRs to determine the evolutionary history of miR-675 target sequences and to identify conserved features that are likely to be involved in post-transcriptional regulation of IGF1R translation.

METHODOLOGY

Sequences of 3'-UTRs were obtained from public databases and analyzed using publicly available algorithms.

RESULTS

A very long 3'-UTR is a conserved feature of vertebrate mRNAs. We found that some ancient microRNAs, such as let-7 and mir-182, have predicted binding sites that are conserved between cartilaginous fish and mammals. One very conserved region is targeted by multiple, maternally expressed imprinted microRNAs that appear to have evolved more recently than the targeted sequences.

CONCLUSIONS AND IMPLICATIONS

The conserved structures we identify in the 3'-UTR are strong candidates for regulating cell proliferation during development and carcinogenesis. These conserved structures are now targeted by multiple imprinted microRNAs. These observations emphasize the central importance of IGF signaling pathways in the mediation of intragenomic conflicts over embryonic growth and identify possible targets for therapeutic interventions in cancer.