嗜中性铁沉积细菌动孢菌属菌株R_H_3的基因组序列草图
Draft Genome Sequence of Actinobacterial Strain Kineosporia sp. R_H_3, a Neutrophilic Iron-Depositing Bacterium.
作者信息
Braun Burga, Künzel Sven, Schröder Josephin, Szewzyk Ulrich
机构信息
Technische Universität Berlin, Berlin, Germany
Max Planck Institute for Evolutionary Biology, Plön, Germany.
出版信息
Genome Announc. 2018 Apr 12;6(15):e00335-18. doi: 10.1128/genomeA.00335-18.
Abstract
The draft genome sequence of a neutrophilic iron-depositing actinobacterial strain, sp. R_H_3, is reported here. Detailed analysis of the genome can elucidate the role of specific cytochromes for Fe oxidation and how this organism might receive energy from Fe oxidation. To date, this is the second publicly available genome sequence of a strain.
摘要
本文报道了嗜中性铁沉积放线菌菌株R_H_3的基因组序列草图。对该基因组的详细分析可以阐明特定细胞色素在铁氧化中的作用，以及这种生物体如何从铁氧化中获取能量。迄今为止，这是该菌株第二个公开可用的基因组序列。
相似文献
1
Draft Genome Sequence of Actinobacterial Strain Kineosporia sp. R_H_3, a Neutrophilic Iron-Depositing Bacterium.嗜中性铁沉积细菌动孢菌属菌株R_H_3的基因组序列草图
Genome Announc. 2018 Apr 12;6(15):e00335-18. doi: 10.1128/genomeA.00335-18.
2
Draft Genome Sequence of the Gram-Positive Neutrophilic Iron-Precipitating sp. Strain A_224.革兰氏阳性嗜中性铁沉淀菌A_224菌株的基因组序列草图
Genome Announc. 2017 Aug 10;5(32):e00763-17. doi: 10.1128/genomeA.00763-17.
3
Draft Genome Sequence of sp. Strain A 288, Isolated from an Iron-Precipitating Biofilm.从铁沉淀生物膜中分离得到的菌株A 288的基因组序列草图
Genome Announc. 2017 Aug 17;5(33):e00803-17. doi: 10.1128/genomeA.00803-17.
4
Draft Genome Sequence of Strain R_RK_3, an Iron-Depositing Isolate of the Genus , Isolated from a Dewatering Well of an Opencast Mine.菌株R_RK_3的基因组序列草图，该菌株为从露天矿脱水井中分离出的某属铁沉积分离株。
Genome Announc. 2017 Aug 24;5(34):e00864-17. doi: 10.1128/genomeA.00864-17.
5
Description of four new species of the genus Kineosporia: Kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the genus Kineosporia.动孢菌属四个新物种的描述：琥珀色动孢菌新种、嗜根动孢菌新种、水国动孢菌新种和鼠李动孢菌新种，从植物样本中分离得到，以及动孢菌属的修订描述。
Int J Syst Bacteriol. 1998 Oct;48 Pt 4:1245-55. doi: 10.1099/00207713-48-4-1245.
6
Draft Genome Sequence of Rheinheimera sp. Strain SA_1 Isolated from Iron Backwash Sludge in Germany.从德国铁反冲洗污泥中分离出的莱茵海默氏菌菌株SA_1的基因组序列草图
Genome Announc. 2016 Aug 18;4(4):e00853-16. doi: 10.1128/genomeA.00853-16.
7
Draft Genome Sequence of Strain B 225, an Iron-Depositing Isolate of the Genus Novosphingobium.新鞘氨醇菌属铁沉积分离株B 225的基因组序列草图
Genome Announc. 2018 Apr 12;6(15):e00325-18. doi: 10.1128/genomeA.00325-18.
8
Kineosporia mesophila sp. nov., isolated from surface-sterilized stems of Tripterygium wilfordii.耐冷游动放线菌，从表面消毒的雷公藤茎中分离得到。
Int J Syst Evol Microbiol. 2009 Dec;59(Pt 12):3150-4. doi: 10.1099/ijs.0.012021-0. Epub 2009 Jul 30.
9
Orenia metallireducens sp. nov. Strain Z6, a Novel Metal-Reducing Member of the Phylum Firmicutes from the Deep Subsurface.新种金属还原奥雷尼亚菌（Orenia metallireducens sp. nov.）菌株Z6，一种来自深部地下的厚壁菌门新型金属还原菌。
Appl Environ Microbiol. 2016 Oct 14;82(21):6440-6453. doi: 10.1128/AEM.02382-16. Print 2016 Nov 1.
10
Draft Genome Sequence of Sideroxydans sp. Strain CL21, an Fe(II)-Oxidizing Bacterium.亚铁氧化细菌Sideroxydans sp.菌株CL21的基因组序列草图
Microbiol Resour Announc. 2020 Jan 9;9(2):e01444-19. doi: 10.1128/MRA.01444-19.
本文引用的文献
1
Draft Genome Sequence of Strain R_RK_3, an Iron-Depositing Isolate of the Genus , Isolated from a Dewatering Well of an Opencast Mine.菌株R_RK_3的基因组序列草图，该菌株为从露天矿脱水井中分离出的某属铁沉积分离株。
Genome Announc. 2017 Aug 24;5(34):e00864-17. doi: 10.1128/genomeA.00864-17.
2
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud：一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
3
Complete Genome Sequence of "Candidatus Viadribacter manganicus" Isolated from a German Floodplain Area.从德国洪泛区分离出的“锰假维亚杆菌（暂定名）”的全基因组序列
Genome Announc. 2016 Sep 1;4(5):e00897-16. doi: 10.1128/genomeA.00897-16.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
6
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
7
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
8
A fast and symmetric DUST implementation to mask low-complexity DNA sequences.一种用于屏蔽低复杂度DNA序列的快速且对称的DUST实现方法。
J Comput Biol. 2006 Jun;13(5):1028-40. doi: 10.1089/cmb.2006.13.1028.
9
INVESTIGATIONS ON THE SPHAEROTILUSLEPTOTHRIX GROUP.球衣菌属相关研究
Antonie Van Leeuwenhoek. 1963;29:121-53. doi: 10.1007/BF02046045.
10
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.空位BLAST和位置特异性迭代BLAST：新一代蛋白质数据库搜索程序。
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389.
Zotero 插件