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原子团簇结构优化的聚类方法。

Clustering methods for the optimization of atomic cluster structure.

机构信息

University of Florence, Florence, Italy.

出版信息

J Chem Phys. 2018 Apr 14;148(14):144102. doi: 10.1063/1.5020858.

Abstract

In this paper, we propose a revised global optimization method and apply it to large scale cluster conformation problems. In the 1990s, the so-called clustering methods were considered among the most efficient general purpose global optimization techniques; however, their usage has quickly declined in recent years, mainly due to the inherent difficulties of clustering approaches in large dimensional spaces. Inspired from the machine learning literature, we redesigned clustering methods in order to deal with molecular structures in a reduced feature space. Our aim is to show that by suitably choosing a good set of geometrical features coupled with a very efficient descent method, an effective optimization tool is obtained which is capable of finding, with a very high success rate, all known putative optima for medium size clusters without any prior information, both for Lennard-Jones and Morse potentials. The main result is that, beyond being a reliable approach, the proposed method, based on the idea of starting a computationally expensive deep local search only when it seems worth doing so, is capable of saving a huge amount of searches with respect to an analogous algorithm which does not employ a clustering phase. In this paper, we are not claiming the superiority of the proposed method compared to specific, refined, state-of-the-art procedures, but rather indicating a quite straightforward way to save local searches by means of a clustering scheme working in a reduced variable space, which might prove useful when included in many modern methods.

摘要

本文提出了一种改进的全局优化方法,并将其应用于大规模聚类构象问题。在 20 世纪 90 年代,所谓的聚类方法被认为是最有效的通用全局优化技术之一;然而,近年来它们的使用迅速减少,主要是由于聚类方法在大维空间中固有的困难。受机器学习文献的启发,我们重新设计了聚类方法,以便在降维特征空间中处理分子结构。我们的目的是表明,通过适当选择一组良好的几何特征,并结合一种非常有效的下降方法,可以得到一种有效的优化工具,该工具能够在没有任何先验信息的情况下,以非常高的成功率找到所有已知的中等大小簇的假定最优解,无论是对于 Lennard-Jones 势还是 Morse 势。主要结果是,除了是一种可靠的方法之外,所提出的方法基于这样的思想,即只有在看起来值得这样做时才开始进行计算成本高昂的深度局部搜索,与不采用聚类阶段的类似算法相比,能够节省大量的搜索。在本文中,我们并不是声称所提出的方法比特定的、精细的、最先进的程序优越,而是指出了一种通过在降维变量空间中使用聚类方案来节省局部搜索的相当简单的方法,当它被包含在许多现代方法中时,可能会证明是有用的。

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