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哈德逊湾西部北极熊体型大小的遗传力。

Heritability of body size in the polar bears of Western Hudson Bay.

机构信息

Department of Biology, University of New Brunswick, Fredericton, NB, Canada.

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

出版信息

Mol Ecol Resour. 2018 Jul;18(4):854-866. doi: 10.1111/1755-0998.12889. Epub 2018 May 3.

Abstract

Among polar bears (Ursus maritimus), fitness is dependent on body size through males' abilities to win mates, females' abilities to provide for their young and all bears' abilities to survive increasingly longer fasting periods caused by climate change. In the Western Hudson Bay subpopulation (near Churchill, Manitoba, Canada), polar bears have declined in body size and condition, but nothing is known about the genetic underpinnings of body size variation, which may be subject to natural selection. Here, we combine a 4449-individual pedigree and an array of 5,433 single nucleotide polymorphisms (SNPs) to provide the first quantitative genetic study of polar bears. We used animal models to estimate heritability (h ) among polar bears handled between 1966 and 2011, obtaining h estimates of 0.34-0.48 for strictly skeletal traits and 0.18 for axillary girth (which is also dependent on fatness). We genotyped 859 individuals with the SNP array to test for marker-trait association and combined p-values over genetic pathways using gene-set analysis. Variation in all traits appeared to be polygenic, but we detected one region of moderately large effect size in body length near a putative noncoding RNA in an unannotated region of the genome. Gene-set analysis suggested that variation in body length was associated with genes in the regulatory cascade of cyclin expression, which has previously been associated with body size in mice. A greater understanding of the genetic architecture of body size variation will be valuable in understanding the potential for adaptation in polar bear populations challenged by climate change.

摘要

在北极熊(Ursus maritimus)中,健康状况取决于体型,这是因为雄性的交配能力、雌性的育幼能力以及所有北极熊的生存能力,都取决于气候变化导致的禁食期越来越长。在哈德逊湾西部亚种群(位于加拿大马尼托巴省丘吉尔附近),北极熊的体型和健康状况都有所下降,但目前尚不清楚体型变化的遗传基础是什么,而这可能受到自然选择的影响。在这里,我们结合了一个由 4449 只个体组成的系谱和一个包含 5433 个单核苷酸多态性(SNP)的数组,首次对北极熊进行了定量遗传学研究。我们使用动物模型来估计 1966 年至 2011 年间处理的北极熊的遗传力(h),得到了严格的骨骼特征的 h 估计值为 0.34-0.48,腋围(也依赖于脂肪量)的 h 估计值为 0.18。我们使用 SNP 数组对 859 只个体进行了基因分型,以测试标记-性状关联,并使用基因集分析对遗传途径上的组合 p 值进行了检验。所有性状的变异似乎都是多基因的,但我们在基因组中一个未注释区域的一个假定非编码 RNA 附近的体长上检测到一个中等大小效应的区域。基因集分析表明,体长的变异与细胞周期蛋白表达调控级联中的基因有关,这与之前在小鼠中与体型有关的基因有关。更好地了解体型变化的遗传结构对于了解气候变化挑战下的北极熊种群的适应潜力将是有价值的。

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