Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.
VIB Center for Plant Systems Biology, 9052 Ghent, Belgium.
Plant Physiol. 2018 Jun;177(2):447-464. doi: 10.1104/pp.18.00175. Epub 2018 Apr 20.
The ability to tag proteins has boosted the emergence of generic molecular methods for protein functional analysis. Fluorescent protein tags are used to visualize protein localization, and affinity tags enable the mapping of molecular interactions by, for example, tandem affinity purification or chromatin immunoprecipitation. To apply these widely used molecular techniques on a single transgenic plant line, we developed a multifunctional tandem affinity purification tag, named GS, which combines the streptavidin-binding peptide tag with citrine yellow fluorescent protein. We demonstrated the versatility of the GS tag in the dicot Arabidopsis () using a set of benchmark proteins. For proof of concept in monocots, we assessed the localization and dynamic interaction profile of the leaf growth regulator ANGUSTIFOLIA3 (AN3), fused to the GS tag, along the growth zone of the maize () leaf. To further explore the function of ZmAN3, we mapped its DNA-binding landscape in the growth zone of the maize leaf through chromatin immunoprecipitation sequencing. Comparison with AN3 target genes mapped in the developing maize tassel or in Arabidopsis cell cultures revealed strong conservation of AN3 target genes between different maize tissues and across monocots and dicots, respectively. In conclusion, the GS tag offers a powerful molecular tool for distinct types of protein functional analyses in dicots and monocots. As this approach involves transforming a single construct, it is likely to accelerate both basic and translational plant research.
蛋白质标记技术的发展促进了通用分子方法在蛋白质功能分析中的应用。荧光蛋白标签用于可视化蛋白质定位,亲和标签则通过串联亲和纯化或染色质免疫沉淀等方法来绘制分子相互作用图谱。为了在单个转基因植物系中应用这些广泛使用的分子技术,我们开发了一种多功能串联亲和纯化标签,命名为 GS,它结合了链霉亲和素结合肽标签和Citrine 黄色荧光蛋白。我们使用一组基准蛋白在双子叶植物拟南芥(Arabidopsis)中验证了 GS 标签的多功能性。为了在单子叶植物中验证概念,我们评估了融合到 GS 标签的叶生长调节剂 ANGUSTIFOLIA3(AN3)在玉米(maize)叶片生长区的定位和动态相互作用谱。为了进一步探索 ZmAN3 的功能,我们通过染色质免疫沉淀测序绘制了其在玉米叶片生长区的 DNA 结合图谱。与在发育中的玉米雄穗或拟南芥细胞培养物中映射的 AN3 靶基因进行比较,揭示了 AN3 靶基因在不同玉米组织以及单子叶植物和双子叶植物之间的强烈保守性。总之,GS 标签为双子叶植物和单子叶植物的不同类型的蛋白质功能分析提供了一种强大的分子工具。由于这种方法涉及转化单个构建体,因此很可能会加速基础和转化植物研究。