Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, Beijing, 100093, China.
Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama, 700-8530, Japan.
Photosynth Res. 2019 Mar;139(1-3):281-293. doi: 10.1007/s11120-018-0507-y. Epub 2018 Apr 24.
The thermophilic purple sulfur bacterium Thermochromatium tepidum possesses four main water-soluble redox proteins involved in the electron transfer behavior. Crystal structures have been reported for three of them: a high potential iron-sulfur protein, cytochrome c', and one of two low-potential cytochrome c (which is a flavocytochrome c) have been determined. In this study, we purified another low-potential cytochrome c (LPC), determined its N-terminal amino acid sequence and the whole gene sequence, characterized it with absorption and electron paramagnetic spectroscopy, and solved its high-resolution crystal structure. This novel cytochrome was found to contain five c-type hemes. The overall fold of LPC consists of two distinct domains, one is the five heme-containing domain and the other one is an Ig-like domain. This provides a representative example for the structures of multiheme cytochromes containing an odd number of hemes, although the structures of multiheme cytochromes with an even number of hemes are frequently seen in the PDB database. Comparison of the sequence and structure of LPC with other proteins in the databases revealed several characteristic features which may be important for its functioning. Based on the results obtained, we discuss the possible intracellular function of this LPC in Tch. tepidum.
嗜热紫色硫细菌 Thermochromatium tepidum 拥有四种主要的水溶性氧化还原蛋白,参与电子传递行为。已经报道了其中三种的晶体结构:一种高电势铁硫蛋白、细胞色素 c',以及两种低电势细胞色素 c(一种黄素细胞色素 c)中的一种。在这项研究中,我们纯化了另一种低电势细胞色素 c(LPC),测定了其 N 端氨基酸序列和全长基因序列,用吸收光谱和电子顺磁共振光谱对其进行了表征,并解析了其高分辨率晶体结构。这种新型细胞色素含有五个 c 型血红素。LPC 的整体折叠由两个不同的结构域组成,一个是含有五个血红素的结构域,另一个是 Ig 样结构域。这为含有奇数个血红素的多血红素细胞色素的结构提供了一个代表性的例子,尽管含有偶数个血红素的多血红素细胞色素的结构在 PDB 数据库中经常被看到。将 LPC 的序列和结构与数据库中的其他蛋白质进行比较,揭示了其可能对其功能很重要的几个特征。基于获得的结果,我们讨论了这种 LPC 在 Tch. tepidum 中的可能的细胞内功能。