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1
PHENIX: a comprehensive Python-based system for macromolecular structure solution.PHENIX:一个基于Python的用于大分子结构解析的综合系统。
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22.
2
Conformational substates of ferricytochrome c revealed by combined optical absorption and electronic circular dichroism spectroscopy at cryogenic temperature.低温下结合光吸收和电子圆二色性光谱揭示的细胞色素 c 铁的构象亚稳态。
Biophys Chem. 2010 Mar;147(1-2):8-12. doi: 10.1016/j.bpc.2009.12.001. Epub 2009 Dec 6.
3
Sulfite oxidation in Sinorhizobium meliloti.苜蓿中华根瘤菌中的亚硫酸盐氧化
Biochim Biophys Acta. 2009 Dec;1787(12):1516-25. doi: 10.1016/j.bbabio.2009.07.005. Epub 2009 Jul 24.
4
Phaser crystallographic software.相位结晶学软件。
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
5
Protein structure prediction on the Web: a case study using the Phyre server.网络上的蛋白质结构预测:使用Phyre服务器的案例研究
Nat Protoc. 2009;4(3):363-71. doi: 10.1038/nprot.2009.2.
6
Structural and molecular genetic insight into a widespread sulfur oxidation pathway.对一种广泛存在的硫氧化途径的结构和分子遗传学见解。
J Mol Biol. 2008 Dec 31;384(5):1287-300. doi: 10.1016/j.jmb.2008.10.016. Epub 2008 Oct 15.
7
Sulfur metabolism in phototrophic sulfur bacteria.光合硫细菌中的硫代谢
Adv Microb Physiol. 2009;54:103-200. doi: 10.1016/S0065-2911(08)00002-7.
8
Identification of two inactive forms of the central sulfur cycle protein SoxYZ of Paracoccus pantotrophus.嗜甲基副球菌中心硫循环蛋白SoxYZ两种无活性形式的鉴定。
FEBS Lett. 2008 Oct 29;582(25-26):3701-4. doi: 10.1016/j.febslet.2008.09.043. Epub 2008 Oct 1.
9
SoxAX binding protein, a novel component of the thiosulfate-oxidizing multienzyme system in the green sulfur bacterium Chlorobium tepidum.SoxAX结合蛋白,嗜热绿硫菌中硫代硫酸盐氧化多酶系统的一种新成分。
J Bacteriol. 2008 Sep;190(18):6097-110. doi: 10.1128/JB.00634-08. Epub 2008 Jul 18.
10
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.使用ARP/wARP 7版本进行X射线晶体学的自动化大分子模型构建。
Nat Protoc. 2008;3(7):1171-9. doi: 10.1038/nprot.2008.91.

SoxAX 细胞色素活性位点的结构与功能研究进展。

Insights into structure and function of the active site of SoxAX cytochromes.

机构信息

Centre for Metals in Biology, School of Chemistry and Molecular Biosciences, University of Queensland, St. Lucia, Queensland 4072, Australia.

出版信息

J Biol Chem. 2011 Jul 15;286(28):24872-81. doi: 10.1074/jbc.M110.212183. Epub 2011 May 18.

DOI:10.1074/jbc.M110.212183
PMID:21592966
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3137062/
Abstract

SoxAX cytochromes catalyze the formation of heterodisulfide bonds between inorganic sulfur compounds and a carrier protein, SoxYZ. They contain unusual His/Cys-ligated heme groups with complex spectroscopic signatures. The heme-ligating cysteine has been implicated in SoxAX catalysis, but neither the SoxAX spectroscopic properties nor its catalysis are fully understood at present. We have solved the first crystal structure for a group 2 SoxAX protein (SnSoxAX), where an N-terminal extension of SoxX forms a novel structure that supports dimer formation. Crystal structures of SoxAX with a heme ligand substitution (C236M) uncovered an inherent flexibility of this SoxA heme site, with both bonding distances and relative ligand orientation differing between asymmetric units and the new residue, Met(236), representing an unusual rotamer of methionine. The flexibility of the SnSoxAX(C236M) SoxA heme environment is probably the cause of the four distinct, new EPR signals, including a high spin ferric heme form, that were observed for the enzyme. Despite the removal of the catalytically active cysteine heme ligand and drastic changes in the redox potential of the SoxA heme (WT, -479 mV; C236M, +85 mV), the substituted enzyme was catalytically active in glutathione-based assays although with reduced turnover numbers (WT, 3.7 s(-1); C236M, 2.0 s(-1)). SnSoxAX(C236M) was also active in assays using SoxYZ and thiosulfate as the sulfur substrate, suggesting that Cys(236) aids catalysis but is not crucial for it. The SoxYZ-based SoxAX assay is the first assay for an isolated component of the Sox multienzyme system.

摘要

SoxAX 细胞色素催化无机硫化合物和载体蛋白 SoxYZ 之间形成杂二硫键。它们含有不寻常的 His/Cys 连接血红素基团,具有复杂的光谱特征。血红素配体的半胱氨酸与 SoxAX 催化作用有关,但 SoxAX 的光谱性质及其催化作用目前尚未完全了解。我们已经解决了第一个 SoxAX 蛋白(SnSoxAX)的晶体结构,其中 SoxX 的 N 端延伸形成了一种支持二聚体形成的新型结构。带有血红素配体取代物(C236M)的 SoxAX 晶体结构揭示了这个 SoxA 血红素位点的固有灵活性,不对称单元之间以及新残基 Met(236)之间的键合距离和相对配体取向都有所不同,Met(236)代表了一种不寻常的蛋氨酸构象。SnSoxAX(C236M)SoxA 血红素环境的灵活性可能是导致该酶观察到四个不同的新 EPR 信号的原因,包括高自旋亚铁血红素形式。尽管催化活性半胱氨酸血红素配体被去除,SoxA 血红素的氧化还原电位发生了巨大变化(WT,-479 mV;C236M,+85 mV),但取代酶在谷胱甘肽基测定中仍然具有催化活性,尽管周转率降低(WT,3.7 s(-1);C236M,2.0 s(-1))。SnSoxAX(C236M)在使用 SoxYZ 和硫代硫酸盐作为硫源的测定中也具有活性,这表明 Cys(236)有助于催化,但不是催化所必需的。基于 SoxYZ 的 SoxAX 测定是 Sox 多酶系统中分离成分的第一个测定。