印度河泻湖宽吻海豚（宽吻海豚）一种新型的全基因组测序
Complete Genome Sequencing of a Novel Type of in Indian River Lagoon Bottlenose Dolphins (Tursiops truncatus).
作者信息
Rodrigues Thaís C S, Subramaniam Kuttichantran, Cortés-Hinojosa Galaxia, Wellehan James F X, Ng Terry Fei Fan, Delwart Eric, McCulloch Stephen D, Goldstein Juli D, Schaefer Adam M, Fair Patricia A, Reif John S, Bossart Gregory D, Waltzek Thomas B
机构信息
Department of Infectious Diseases and Immunology, College of Veterinary Medicine University of Florida, Gainesville, Florida, USA.
Department of Small Animal Clinical Sciences, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA.
出版信息
Genome Announc. 2018 Apr 26;6(17):e00240-18. doi: 10.1128/genomeA.00240-18.
Abstract
The genome sequence of a papillomavirus was determined from fecal samples collected from bottlenose dolphins in the Indian River Lagoon, FL. The genome was 7,772 bp and displayed a typical papillomavirus genome organization. Phylogenetic analysis supported the bottlenose dolphin papillomavirus as being a novel type of .
摘要
从佛罗里达州印第安河泻湖的宽吻海豚粪便样本中确定了一种乳头瘤病毒的基因组序列。该基因组为7772个碱基对，呈现出典型的乳头瘤病毒基因组结构。系统发育分析支持宽吻海豚乳头瘤病毒为一种新型的……
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2
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J Virol. 2015 May;89(10):5340-9. doi: 10.1128/JVI.00064-15. Epub 2015 Mar 4.
3
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE：一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
4
Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch.从北极地区一个冰原中保存的700年前驯鹿粪便中提取病毒基因组。
Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16842-7. doi: 10.1073/pnas.1410429111. Epub 2014 Oct 27.
5
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