印度河泻湖宽吻海豚（宽吻海豚）一种新型的全基因组测序
Complete Genome Sequencing of a Novel Type of in Indian River Lagoon Bottlenose Dolphins (Tursiops truncatus).
作者信息
Rodrigues Thaís C S, Subramaniam Kuttichantran, Cortés-Hinojosa Galaxia, Wellehan James F X, Ng Terry Fei Fan, Delwart Eric, McCulloch Stephen D, Goldstein Juli D, Schaefer Adam M, Fair Patricia A, Reif John S, Bossart Gregory D, Waltzek Thomas B
机构信息
Department of Infectious Diseases and Immunology, College of Veterinary Medicine University of Florida, Gainesville, Florida, USA.
Department of Small Animal Clinical Sciences, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA.
出版信息
Genome Announc. 2018 Apr 26;6(17):e00240-18. doi: 10.1128/genomeA.00240-18.
Abstract
The genome sequence of a papillomavirus was determined from fecal samples collected from bottlenose dolphins in the Indian River Lagoon, FL. The genome was 7,772 bp and displayed a typical papillomavirus genome organization. Phylogenetic analysis supported the bottlenose dolphin papillomavirus as being a novel type of .
摘要
从佛罗里达州印第安河泻湖的宽吻海豚粪便样本中确定了一种乳头瘤病毒的基因组序列。该基因组为7772个碱基对，呈现出典型的乳头瘤病毒基因组结构。系统发育分析支持宽吻海豚乳头瘤病毒为一种新型的……
相似文献
1
Complete Genome Sequencing of a Novel Type of in Indian River Lagoon Bottlenose Dolphins (Tursiops truncatus).
Genome Announc. 2018 Apr 26;6(17):e00240-18. doi: 10.1128/genomeA.00240-18.
2
Genomic sequencing of a virus representing a novel type within the species Dyopipapillomavirus 1 in an Indian River Lagoon bottlenose dolphin.
Arch Virol. 2019 Mar;164(3):767-774. doi: 10.1007/s00705-018-04117-5. Epub 2019 Jan 20.
3
Lacaziosis in bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida, USA.
J Wildl Dis. 2009 Jul;45(3):849-56. doi: 10.7589/0090-3558-45.3.849.
4
MORBIDITY AND MORTALITY PATTERNS OF INDIAN RIVER LAGOON COMMON BOTTLENOSE DOLPHINS (TURSIOPS TRUNCATUS TRUNCATUS) 2002-2020.
J Wildl Dis. 2023 Oct 1;59(4):616-628. doi: 10.7589/JWD-D-22-00156.
5
Mercury concentrations in Atlantic bottlenose dolphins (Tursiops truncatus) inhabiting the Indian River Lagoon, Florida: Patterns of spatial and temporal distribution.
Mar Pollut Bull. 2015 Aug 15;97(1-2):544-547. doi: 10.1016/j.marpolbul.2015.05.007. Epub 2015 Jun 26.
6
Blubber morphology in wild bottlenose dolphins (Tursiops truncatus) from the Southeastern United States: influence of geographic location, age class, and reproductive state.
J Morphol. 2008 Apr;269(4):496-511. doi: 10.1002/jmor.10602.
7
Genomic characterization of a novel pegivirus species from free-ranging bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida.
Virus Res. 2019 Apr 2;263:98-101. doi: 10.1016/j.virusres.2019.01.002. Epub 2019 Jan 8.
8
Antibiotic-resistant organisms cultured from Atlantic bottlenose dolphins (Tursiops truncatus) inhabiting estuarine waters of Charleston, SC and Indian River Lagoon, FL.
Ecohealth. 2009 Mar;6(1):33-41. doi: 10.1007/s10393-009-0221-5. Epub 2009 May 5.
9
Temporal Trends in Per- and Polyfluoroalkyl Substances in Bottlenose Dolphins () of Indian River Lagoon, Florida and Charleston, South Carolina.
Environ Sci Technol. 2019 Dec 17;53(24):14194-14203. doi: 10.1021/acs.est.9b04585. Epub 2019 Dec 5.
10
Home ranges of bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida: environmental correlates and implications for management strategies.
Ecohealth. 2008 Sep;5(3):278-88. doi: 10.1007/s10393-008-0194-9. Epub 2008 Oct 8.
引用本文的文献
1
Anogenital-Associated Papillomaviruses in Animals: Focusing on Papillomaviruses.
Pathogens. 2020 Nov 27;9(12):993. doi: 10.3390/pathogens9120993.
2
Comparative Innate and Adaptive Immune Responses in Atlantic Bottlenose Dolphins () With Viral, Bacterial, and Fungal Infections.
Front Immunol. 2019 May 29;10:1125. doi: 10.3389/fimmu.2019.01125. eCollection 2019.
3
Complete Genome Sequences of Papillomavirus Isolates from the Oral Cavity, Skin, and Feces of Wild Rats.
Microbiol Resour Announc. 2018 Nov 1;7(17). doi: 10.1128/MRA.01258-18. eCollection 2018 Nov.
本文引用的文献
1
Genomic sequencing of a virus representing a novel type within the species Dyopipapillomavirus 1 in an Indian River Lagoon bottlenose dolphin.
Arch Virol. 2019 Mar;164(3):767-774. doi: 10.1007/s00705-018-04117-5. Epub 2019 Jan 20.
2
A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.
J Virol. 2015 May;89(10):5340-9. doi: 10.1128/JVI.00064-15. Epub 2015 Mar 4.
3
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
4
Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch.
Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16842-7. doi: 10.1073/pnas.1410429111. Epub 2014 Oct 27.
5
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.
PLoS One. 2014 Sep 26;9(9):e108277. doi: 10.1371/journal.pone.0108277. eCollection 2014.
6
High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage.
J Virol. 2012 Nov;86(22):12161-75. doi: 10.1128/JVI.00869-12. Epub 2012 Aug 29.
7
Evidence of recombination and positive selection in cetacean papillomaviruses.
Virology. 2012 Jun 5;427(2):189-97. doi: 10.1016/j.virol.2012.01.039. Epub 2012 Mar 3.
8
Modular organizations of novel cetacean papillomaviruses.
Mol Phylogenet Evol. 2011 Apr;59(1):34-42. doi: 10.1016/j.ympev.2010.12.013. Epub 2010 Dec 31.
9
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13. doi: 10.1093/nar/gkq291. Epub 2010 Apr 30.
10
Genomic characterization of novel dolphin papillomaviruses provides indications for recombination within the Papillomaviridae.
Virology. 2008 Aug 15;378(1):151-61. doi: 10.1016/j.virol.2008.05.020. Epub 2008 Jun 24.
Zotero 插件