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脊椎动物性染色体的甲基化组

The Methylome of Vertebrate Sex Chromosomes.

作者信息

Waters Shafagh A, Capraro Alexander, McIntyre Kim L, Marshall Graves Jennifer A, Waters Paul D

机构信息

School of Biotechnology & Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney, NSW 2052, Australia.

School of Women's and Children's Health, Faculty of Medicine, University of New South Wales, Sydney, NSW 2052, Australia.

出版信息

Genes (Basel). 2018 May 1;9(5):230. doi: 10.3390/genes9050230.

DOI:10.3390/genes9050230
PMID:29723955
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5977170/
Abstract

DNA methylation is a key epigenetic modification in vertebrate genomes known to be involved in the regulation of gene expression, X chromosome inactivation, genomic imprinting, chromatin structure, and control of transposable elements. DNA methylation is common to all eukaryote genomes, but we still lack a complete understanding of the variation in DNA methylation patterns on sex chromosomes and between the sexes in diverse species. To better understand sex chromosome DNA methylation patterns between different amniote vertebrates, we review literature that has analyzed the genome-wide distribution of DNA methylation in mammals and birds. In each system, we focus on DNA methylation patterns on the autosomes versus the sex chromosomes.

摘要

DNA甲基化是脊椎动物基因组中一种关键的表观遗传修饰,已知其参与基因表达调控、X染色体失活、基因组印记、染色质结构以及转座元件的控制。DNA甲基化在所有真核生物基因组中都很常见,但我们仍缺乏对不同物种性染色体上以及两性之间DNA甲基化模式差异的全面理解。为了更好地了解不同羊膜动物脊椎动物之间的性染色体DNA甲基化模式,我们回顾了分析哺乳动物和鸟类DNA甲基化全基因组分布的文献。在每个系统中,我们关注常染色体与性染色体上的DNA甲基化模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/615f/5977170/01e539c7c47b/genes-09-00230-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/615f/5977170/e8a011e78e53/genes-09-00230-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/615f/5977170/01e539c7c47b/genes-09-00230-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/615f/5977170/e8a011e78e53/genes-09-00230-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/615f/5977170/01e539c7c47b/genes-09-00230-g002.jpg

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本文引用的文献

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Global delay in nascent strand DNA methylation.新生链 DNA 甲基化的全球延迟。
Nat Struct Mol Biol. 2018 Apr;25(4):327-332. doi: 10.1038/s41594-018-0046-4. Epub 2018 Mar 12.
2
Genome-wide DNA methylation profiling using the methylation-dependent restriction enzyme LpnPI.利用依赖于甲基化的限制性内切酶 LpnPI 进行全基因组 DNA 甲基化分析。
Genome Res. 2018 Jan;28(1):88-99. doi: 10.1101/gr.222885.117. Epub 2017 Dec 8.
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Landscape of DNA Methylation on the Marsupial X.有袋动物 X 上的 DNA 甲基化景观。
Epigenetics and the city: Non-parallel DNA methylation modifications across pairs of urban-forest Great tit populations.
表观遗传学与城市:城市-森林大山雀种群对之间非平行的DNA甲基化修饰
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Heat stress and immune response phenotype affect DNA methylation in blood mononuclear cells from Holstein dairy cows.热应激和免疫反应表型影响荷斯坦奶牛血液单核细胞中的 DNA 甲基化。
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Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation.哺乳动物和鸟类中存在性染色体偏倚的 microRNA 表达,揭示了潜在的调控机制和在剂量补偿中的作用。
Genome Res. 2017 Dec;27(12):1961-1973. doi: 10.1101/gr.225391.117. Epub 2017 Oct 27.
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Allele-Specific Expression Analysis Does Not Support Sex Chromosome Inactivation on the Chicken Z Chromosome.等位基因特异性表达分析不支持鸡Z染色体上的性染色体失活。
Genome Biol Evol. 2017 Mar 1;9(3):619-626. doi: 10.1093/gbe/evx031.
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Nat Genet. 2017 Mar;49(3):387-394. doi: 10.1038/ng.3778. Epub 2017 Jan 30.
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Higher order methylation features for clustering and prediction in epigenomic studies.用于表观基因组学研究中聚类和预测的高阶甲基化特征
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Derivation of consensus inactivation status for X-linked genes from genome-wide studies.从全基因组研究中推导X连锁基因的一致失活状态
Biol Sex Differ. 2015 Dec 30;6:35. doi: 10.1186/s13293-015-0053-7. eCollection 2015.
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Evolution of vertebrate sex chromosomes and dosage compensation.脊椎动物性染色体和剂量补偿的演化。
Nat Rev Genet. 2016 Jan;17(1):33-46. doi: 10.1038/nrg.2015.2. Epub 2015 Nov 30.
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Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation.人类中性粒细胞的全基因组DNA甲基化图谱揭示了广泛的个体间表观遗传变异。
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