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入侵性巴西胡椒树(Schinus terebinthifolius)被富含α-变形菌和未分类斯巴达细菌的根际微生物群定殖。

The Invasive Brazilian Pepper Tree () Is Colonized by a Root Microbiome Enriched With Alphaproteobacteria and Unclassified Spartobacteria.

作者信息

Dawkins Karim, Esiobu Nwadiuto

机构信息

Microbial Biotech Lab, Biological Sciences Department, Charles E. Schmidt College of Science, Florida Atlantic University, Boca Raton, FL, United States.

出版信息

Front Microbiol. 2018 May 3;9:876. doi: 10.3389/fmicb.2018.00876. eCollection 2018.

Abstract

Little is known about the rhizosphere microbiome of the Brazilian pepper tree (BP) - a noxious category 1 invasive plant inducing an enormous economic and ecological toll in Florida. Some invasive plants have been shown to drastically change the soil microbiome compared to other native plants. The rhizobacteria community structure of BP, two Florida native plants ( and ) and bulk soils were characterized across six geographical sites. Although all 19 well-known and 10 poorly described phyla were observed in all plant rhizospheres, BP contained the least total bacterial abundance (OTUs) with a distinct bacteria community structure and clustering patterns differing significantly (pCOA and PERMANOVA) from the natives and bulk soil. The BP rhizosphere community contained the highest overall Proteobacteria diversity (Shannon's diversity 3.25) in spite of a twofold reduction in richness of the Gammaproteobacteria. Remarkably, the invasive BP rhizosphere was highly enriched with Alphaproteobacteria, dominated by Rhizobiales, including Rhodoplanes and Bradyrhizobiaceae. Also, the relative abundance of Spartobacteria under BP rhizosphere was more than twice that of native plants and bulk soil; featuring unique members of the family Chthoniobacteraceae (DA101 genus). The trend was different for the family Pedosphaerae in the phylum Verrucomicrobia where the abundance declined under BP (26%) compared to (33-66%) for the native plant and bulk soil. BP shared the lowest number of unique phylotypes with bulk soil (146) compared to the other native plants with bulk soil ( - 222, - 520) suggestive of its capacity to overcome biotic resistance. Although there were no specific biomarkers found, taken together, our data suggests that the occurrence of key bacteria groups across multiple taxonomic ranks provides a somewhat consistent profile of the invasive BP rhizo-community. Furthermore, based on the observed prevalence of a bacteria group (Spartobacteria - Chthoniobacteraceae - DA101); we propose that they have a possible role in BP biology. Our results emphasize the need to further investigate the potential value of "unique phylotypes" in the rhizosphere relative to bulk soil as an ecological tool for monitoring plant-cover/invasion history; or even detecting exotic plants with invasion tendencies.

摘要

对于巴西胡椒树(BP)的根际微生物群落,我们所知甚少。巴西胡椒树是一种有害的1类入侵植物,在佛罗里达州造成了巨大的经济和生态损失。与其他本土植物相比,一些入侵植物已被证明会极大地改变土壤微生物群落。我们对BP、两种佛罗里达州本土植物( 和 )以及六个地理地点的大量土壤的根际细菌群落结构进行了表征。尽管在所有植物根际中都观察到了所有19个知名门和10个描述较少的门,但BP的总细菌丰度(OTU)最低,其细菌群落结构和聚类模式与本土植物和大量土壤有显著差异(pCOA和PERMANOVA)。尽管γ-变形菌的丰富度降低了两倍,但BP根际群落的总体变形菌多样性最高(香农多样性为3.25)。值得注意的是,入侵的BP根际富含α-变形菌,以根瘤菌目为主,包括红平红球菌和慢生根瘤菌科。此外,BP根际下的鞘脂杆菌相对丰度是本土植物和大量土壤的两倍多;其特征是噬几丁质杆菌科(DA101属)的独特成员。疣微菌门中的Pedosphaerae科的趋势则不同,与本土植物和大量土壤相比,BP下的丰度下降(26%),而本土植物和大量土壤的丰度为(33 - 66%)。与其他与大量土壤的本土植物( - 222, - 520)相比,BP与大量土壤共享的独特系统型数量最少(146),这表明其克服生物抗性的能力。尽管没有发现特定的生物标志物,但综合来看,我们的数据表明多个分类等级中关键细菌群的出现提供了入侵BP根际群落的某种一致概况。此外,基于观察到的一个细菌群(鞘脂杆菌 - 噬几丁质杆菌科 - DA101)的普遍性;我们认为它们可能在BP生物学中发挥作用。我们的结果强调需要进一步研究根际中“独特系统型”相对于大量土壤作为监测植物覆盖/入侵历史的生态工具的潜在价值;甚至检测具有入侵倾向的外来植物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f16/5943492/506d6ea9cd35/fmicb-09-00876-g001.jpg

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