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圣塔因斯羊脂肪酸谱的基因组遗传力估计和全基因组关联研究。

Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep.

机构信息

Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil.

Institute of Zootechny (IZ), Nova Odessa, SP, Brazil.

出版信息

BMC Genomics. 2018 May 21;19(1):375. doi: 10.1186/s12864-018-4777-8.

Abstract

BACKGROUND

Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of sheep, we conducted genome-wide association studies (GWAS) and estimated genomic heritabilities for fatty acid profile in Longissimus dorsi muscle of 216 male sheep.

RESULTS

Genomic heritability estimates for fatty acid content ranged from 0.25 to 0.46, indicating that substantial genetic variation exists for the evaluated traits. Therefore, it is possible to alter fatty acid profiles through selection. Twenty-seven genomic regions of 10 adjacent SNPs associated with fatty acids composition were identified on chromosomes 1, 2, 3, 5, 8, 12, 14, 15, 16, 17, and 18, each explaining ≥0.30% of the additive genetic variance. Twenty-three genes supporting the understanding of genetic mechanisms of fat composition in sheep were identified in these regions, such as DGAT2, TRHDE, TPH2, ME1, C6, C7, UBE3D, PARP14, and MRPS30.

CONCLUSIONS

Estimates of genomic heritabilities and elucidating important genomic regions can contribute to a better understanding of the genetic control of fatty acid deposition and improve the selection strategies to enhance meat quality and health attributes.

摘要

背景

尽管脂肪酸对健康和营养都很重要,但文献中关于其遗传或基因组参数的研究相对较少,特别是在绵羊群体方面。为了研究绵羊脂肪酸组成的遗传结构,我们对 216 只雄性绵羊背最长肌的脂肪酸谱进行了全基因组关联研究(GWAS)和估计基因组遗传力。

结果

脂肪酸含量的基因组遗传力估计值在 0.25 到 0.46 之间,表明评估性状存在大量遗传变异。因此,可以通过选择来改变脂肪酸谱。在染色体 1、2、3、5、8、12、14、15、16、17 和 18 上确定了 27 个与脂肪酸组成相关的 10 个相邻 SNP 的基因组区域,每个区域解释了 ≥0.30%的加性遗传方差。在这些区域中鉴定了 23 个支持绵羊脂肪组成遗传机制理解的基因,如 DGAT2、TRHDE、TPH2、ME1、C6、C7、UBE3D、PARP14 和 MRPS30。

结论

基因组遗传力的估计值和阐明重要的基因组区域有助于更好地理解脂肪酸沉积的遗传控制,并改进选择策略以提高肉质和健康属性。

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