Yao Shenggen, Meikle Thomas G, Sethi Ashish, Separovic Frances, Babon Jeffrey J, Keizer David W
Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.
School of Science, College of Science, Engineering and Health, RMIT University, Melbourne, VIC, 3000, Australia.
Eur Biophys J. 2018 Dec;47(8):891-902. doi: 10.1007/s00249-018-1311-5. Epub 2018 May 21.
Pulsed-field gradient nuclear magnetic resonance has seen an increase in applications spanning a broad range of disciplines where molecular translational diffusion properties are of interest. The current study introduces and experimentally evaluates the measurement of translational diffusion coefficients of N-enriched biomolecules using a H-N HMQC-filtered band-selective excitation short transient (BEST) sequence as an alternative to the previously described SOFAST-XSTE sequence. The results demonstrate that accurate translational diffusion coefficients of N-labelled peptides and proteins can be obtained using this alternative H-N HMQC-filtered BEST sequence which is implementable on NMR spectrometers equipped with probes fitted with a single-axis field gradient, including most cryoprobes dedicated to bio-NMR. The sequence is of potential use for direct quantification of protein or peptide translational diffusion within complex systems, such as in mixtures of macromolecules, crowded solutions, membrane-mimicking media and in bicontinuous cubic phases, where conventional sequences may not be readily applicable due to the presence of intense signals arising from sources other than the protein or peptide under investigation.
脉冲场梯度核磁共振在广泛的学科领域中的应用有所增加,这些领域关注分子平移扩散特性。当前的研究介绍并通过实验评估了使用H-N HMQC滤波带选择性激发短瞬态(BEST)序列测量富含氮的生物分子的平移扩散系数,以此作为先前描述的SOFAST-XSTE序列的替代方法。结果表明,使用这种替代的H-N HMQC滤波BEST序列可以获得N标记的肽和蛋白质的准确平移扩散系数,该序列可在配备单轴场梯度探头的核磁共振光谱仪上实现,包括大多数用于生物核磁共振的低温探头。该序列对于直接定量复杂系统中蛋白质或肽的平移扩散具有潜在用途,例如在大分子混合物、拥挤溶液、膜模拟介质和双连续立方相中,由于存在来自正在研究的蛋白质或肽以外的其他来源的强信号,传统序列可能不太适用。