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在产生有毒和无毒寡聚体的条件下HypF-N的主链核磁共振信号归属

Backbone NMR assignments of HypF-N under conditions generating toxic and non-toxic oligomers.

作者信息

Patel Jayneil R, Xu Yingqi, Capitini Claudia, Chiti Fabrizio, De Simone Alfonso

机构信息

Department of Life Sciences, Imperial College London, South Kensington, London, SW72AZ, UK.

Section of Biochemistry, Department of Experimental and Clinical Biomedical Sciences, University of Florence, Viale Morgagni 50, 50134, Firenze, Italy.

出版信息

Biomol NMR Assign. 2018 Oct;12(2):273-277. doi: 10.1007/s12104-018-9822-7. Epub 2018 May 21.

DOI:10.1007/s12104-018-9822-7
PMID:29786756
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6132818/
Abstract

The HypF protein is involved in the maturation and regulation of hydrogenases. The N-terminal domain of HypF (HypF-N) has served as a key model system to study the pathways of protein amyloid formation and the nature of the toxicity of pre-fibrilar protein oligomers. This domain can aggregate into two forms of oligomers having significantly different toxic effects when added to neuronal cultures. Here, NMR assignments of HypF-N backbone resonances are presented in its native state and under the conditions favouring the formation of toxic and non-toxic oligomers. The analyses of chemical shifts provide insights into the protein conformational state and the possible pathways leading to the formation of different types of oligomers.

摘要

HypF蛋白参与氢化酶的成熟和调节。HypF的N端结构域(HypF-N)已成为研究蛋白质淀粉样形成途径和纤维前体蛋白寡聚体毒性本质的关键模型系统。当添加到神经元培养物中时,该结构域可聚集成两种具有显著不同毒性作用的寡聚体形式。本文给出了HypF-N主链共振在其天然状态以及有利于形成有毒和无毒寡聚体的条件下的核磁共振归属。化学位移分析为蛋白质构象状态以及导致形成不同类型寡聚体的可能途径提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9867/6132818/2ce179b2294b/12104_2018_9822_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9867/6132818/bc577374c54c/12104_2018_9822_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9867/6132818/2ce179b2294b/12104_2018_9822_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9867/6132818/bc577374c54c/12104_2018_9822_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9867/6132818/2ce179b2294b/12104_2018_9822_Fig2_HTML.jpg

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本文引用的文献

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Structural basis of membrane disruption and cellular toxicity by α-synuclein oligomers.α-突触核蛋白寡聚物导致膜破坏和细胞毒性的结构基础。
Science. 2017 Dec 15;358(6369):1440-1443. doi: 10.1126/science.aan6160.
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Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts.利用核磁共振化学位移测定蛋白质无规卷曲状态的二级结构含量。
Biochemistry. 2012 Mar 20;51(11):2224-31. doi: 10.1021/bi3001825. Epub 2012 Mar 6.
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Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility.
实验自由能表面揭示了维持蛋白质可溶性的机制。
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21057-62. doi: 10.1073/pnas.1112197108. Epub 2011 Dec 12.
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Structure of hydrogenase maturation protein HypF with reaction intermediates shows two active sites.氢化酶成熟蛋白 HypF 与反应中间体的结构显示两个活性位点。
Structure. 2011 Dec 7;19(12):1773-83. doi: 10.1016/j.str.2011.09.023.
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¹H, ¹³C and ¹⁵N resonance assignments of human muscle acylphosphatase.
Biomol NMR Assign. 2012 Apr;6(1):27-9. doi: 10.1007/s12104-011-9318-1. Epub 2011 Jun 5.
6
A comparison of the biochemical modifications caused by toxic and non-toxic protein oligomers in cells.有毒和无毒蛋白质低聚物在细胞中引起的生化修饰的比较。
J Cell Mol Med. 2011 Oct;15(10):2106-16. doi: 10.1111/j.1582-4934.2010.01239.x.
7
A causative link between the structure of aberrant protein oligomers and their toxicity.异常蛋白寡聚物的结构与其毒性之间存在因果关系。
Nat Chem Biol. 2010 Feb;6(2):140-7. doi: 10.1038/nchembio.283. Epub 2010 Jan 10.
8
Structure and dynamics of a partially folded protein are decoupled from its mechanism of aggregation.部分折叠蛋白质的结构与动力学与其聚集机制解耦。
J Am Chem Soc. 2008 Oct 1;130(39):13040-50. doi: 10.1021/ja8029224. Epub 2008 Sep 4.
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Natively folded HypF-N and its early amyloid aggregates interact with phospholipid monolayers and destabilize supported phospholipid bilayers.天然折叠的HypF-N及其早期淀粉样聚集体与磷脂单层相互作用,并使支撑的磷脂双层不稳定。
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10
Protein misfolding, functional amyloid, and human disease.蛋白质错误折叠、功能性淀粉样蛋白与人类疾病
Annu Rev Biochem. 2006;75:333-66. doi: 10.1146/annurev.biochem.75.101304.123901.