SoS Notebook：一个交互式多语言数据分析环境。
SoS Notebook: an interactive multi-language data analysis environment.
机构信息
Department of Bioinformatics and Computational Biology, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.
Department of Human Genetics, The University of Chicago, Chicago, IL, USA.
出版信息
Bioinformatics. 2018 Nov 1;34(21):3768-3770. doi: 10.1093/bioinformatics/bty405.
MOTIVATION
Complex bioinformatic data analysis workflows involving multiple scripts in different languages can be difficult to consolidate, share and reproduce. An environment that streamlines the entire processes of data collection, analysis, visualization and reporting of such multi-language analyses is currently lacking.
RESULTS
We developed Script of Scripts (SoS) Notebook, a web-based notebook environment that allows the use of multiple scripting language in a single notebook, with data flowing freely within and across languages. SoS Notebook enables researchers to perform sophisticated bioinformatic analysis using the most suitable tools for different parts of the workflow, without the limitations of a particular language or complications of cross-language communications.
AVAILABILITY AND IMPLEMENTATION
SoS Notebook is hosted at http://vatlab.github.io/SoS/ and is distributed under a BSD license.
动机
涉及多种语言的多个脚本的复杂生物信息学数据分析工作流程很难整合、共享和重现。目前缺乏一种能够简化此类多语言分析的数据收集、分析、可视化和报告整个流程的环境。
结果
我们开发了 Script of Scripts (SoS) Notebook，这是一种基于网络的笔记本环境，允许在单个笔记本中使用多种脚本语言，并且数据可以在语言内部和语言之间自由流动。SoS Notebook 使研究人员能够使用最适合工作流程不同部分的工具来执行复杂的生物信息学分析，而不受特定语言的限制或跨语言通信的复杂性的影响。
可用性和实现
SoS Notebook 托管在 http://vatlab.github.io/SoS/ 上，并根据 BSD 许可证分发。
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