Murdoch Childrens Research Institute, Royal Children's Hospital, Flemington Road, Parkville, Victoria 3052, Australia.
Bioinformatics. 2012 Jun 1;28(11):1525-6. doi: 10.1093/bioinformatics/bts167. Epub 2012 Apr 12.
SUMMARY: Bpipe is a simple, dedicated programming language for defining and executing bioinformatics pipelines. It specializes in enabling users to turn existing pipelines based on shell scripts or command line tools into highly flexible, adaptable and maintainable workflows with a minimum of effort. Bpipe ensures that pipelines execute in a controlled and repeatable fashion and keeps audit trails and logs to ensure that experimental results are reproducible. Requiring only Java as a dependency, Bpipe is fully self-contained and cross-platform, making it very easy to adopt and deploy into existing environments. AVAILABILITY AND IMPLEMENTATION: Bpipe is freely available from http://bpipe.org under a BSD License.
摘要：Bpipe 是一种用于定义和执行生物信息学流程的简单、专用编程语言。它专门用于使用户能够将基于 shell 脚本或命令行工具的现有流程转变为具有高度灵活性、适应性和可维护性的工作流程，而无需付出太多努力。Bpipe 确保流程以受控和可重复的方式执行，并保持审计跟踪和日志，以确保实验结果可重现。Bpipe 仅需要 Java 作为依赖项，它是完全自包含的和跨平台的，因此非常容易采用并部署到现有的环境中。
可用性和实现：Bpipe 可从 http://bpipe.org 免费获得，采用 BSD 许可证。
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