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一个心爱的属有多少个名字?——基于合并的苍耳属(Ambrosiinae,菊科)的物种界定。

How many names for a beloved genus? - Coalescent-based species delimitation in Xanthium L. (Ambrosiinae, Asteraceae).

机构信息

Department of Systematics, Biodiversity and Evolution of Plants, Albrecht-von-Haller Institute for Plant Sciences, University of Göttingen, Untere Karspüle 2, 37073 Göttingen, Germany.

出版信息

Mol Phylogenet Evol. 2018 Oct;127:135-145. doi: 10.1016/j.ympev.2018.05.024. Epub 2018 May 23.

Abstract

The species category is the fundamental unit in biology. In the last decades, several studies have been carried out, using sequence information and phylogenies to resolve issues in taxonomically problematic groups. The multispecies coalescent theory, and the species-delimitation methods developed in the last years based on that, offer powerful and objective tools to determine species boundaries using sequence data. The genus Xanthium is a morphologically variable complex with several local forms, nowadays become cosmopolitan due to human-mediated dispersal. Past taxonomic treatments of the genus were based essentially on the burr morphology. They varied considerably in number of recognized species, depending on the importance that the different authors gave to burr traits such as burr size, pubescence, number and length of spines in the burrs, and the degree to which those are hooked. We used sequence information from two plastid regions (the intergenic spacer regions psbA-trnH and trnQ-rps16) and two nuclear ones (ITS1-5.8 S-ITS2 rDNA, and the single-copy nuclear marker D35). Two of the most advanced coalescent-based species delimitation methods (BP&P and STACEY) were applied, in order to objectively determine species boundaries in Xanthium. Results from the species-delimitation methods strongly support scenarios with a reduced number of species. Prior on the effective population size parameter (θ) had a strong influence on BP&P results. Analyses with large and small θ prior supported species delimitation scenarios with four and five species, respectively. STACEY recognized five cluster in the dataset, all supported by high posterior probability values. Five species are identified in Xanthium, in a great extent corresponding to the infrageneric classification given for the genus in past taxonomic revisions.

摘要

物种类别是生物学的基本单位。在过去的几十年中,已经进行了多项研究,利用序列信息和系统发育学来解决分类上有问题的群体的问题。多物种合并理论,以及近年来基于该理论发展的物种界定方法,为使用序列数据确定物种界限提供了强大而客观的工具。苍耳属是一个形态变异复杂的属,有几个地方形态,现在由于人类介导的扩散而变得世界性分布。过去对该属的分类处理主要基于刺果的形态。它们在被识别的物种数量上有很大的差异,这取决于不同作者对刺果形态特征的重视程度,如刺果的大小、绒毛、刺的数量和长度,以及这些特征的钩状程度。我们使用了来自两个质体区域(基因间间隔区 psbA-trnH 和 trnQ-rps16)和两个核区域(ITS1-5.8S-ITS2 rDNA 和单拷贝核标记 D35)的序列信息。应用了两种最先进的基于合并的物种界定方法(BP&P 和 STACEY),以客观地确定苍耳属中的物种界限。物种界定方法的结果强烈支持物种数量减少的情景。在有效种群大小参数(θ)之前,对 BP&P 结果有很强的影响。大θ和小θ先验的分析分别支持具有四个和五个物种的物种界定情景。STACEY 在数据集上识别出五个聚类,所有聚类都得到了高后验概率值的支持。在苍耳属中鉴定出五个物种,在很大程度上对应于过去分类修订中对该属的种下分类。

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