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本文引用的文献

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Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories.Cameo:一个用于计算机辅助代谢工程和细胞工厂优化的Python库。
ACS Synth Biol. 2018 Apr 20;7(4):1163-1166. doi: 10.1021/acssynbio.7b00423. Epub 2018 Apr 4.
2
Selective production of decanoic acid from iterative reversal of β-oxidation pathway.从β-氧化途径的反复反转中选择性地生产癸酸。
Biotechnol Bioeng. 2018 May;115(5):1311-1320. doi: 10.1002/bit.26540. Epub 2018 Feb 4.
3
Genome sequence and analysis of production strain LS5218.生产菌株LS5218的基因组序列与分析
Metab Eng Commun. 2017 Nov 2;5:78-83. doi: 10.1016/j.meteno.2017.10.001. eCollection 2017 Dec.
4
Characterization of Endogenous and Reduced Promoters for Oxygen-Limited Processes Using Escherichia coli.利用大肠杆菌对氧气受限过程中的内源性和还原型启动子进行表征。
ACS Synth Biol. 2017 Feb 17;6(2):344-356. doi: 10.1021/acssynbio.6b00233. Epub 2016 Oct 13.
5
Production of 1-decanol by metabolically engineered Yarrowia lipolytica.通过代谢工程改造的解脂耶氏酵母生产1-癸醇。
Metab Eng. 2016 Nov;38:139-147. doi: 10.1016/j.ymben.2016.07.011. Epub 2016 Jul 26.
6
Room temperature electrocompetent bacterial cells improve DNA transformation and recombineering efficiency.室温电感受态细菌细胞可提高DNA转化和重组工程效率。
Sci Rep. 2016 Apr 20;6:24648. doi: 10.1038/srep24648.
7
A transcription activator-like effector (TALE) induction system mediated by proteolysis.一种由蛋白水解介导的转录激活样效应因子(TALE)诱导系统。
Nat Chem Biol. 2016 Apr;12(4):254-60. doi: 10.1038/nchembio.2021. Epub 2016 Feb 8.
8
Codon influence on protein expression in E. coli correlates with mRNA levels.密码子对大肠杆菌中蛋白质表达的影响与mRNA水平相关。
Nature. 2016 Jan 21;529(7586):358-363. doi: 10.1038/nature16509. Epub 2016 Jan 13.
9
Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing.利用CRISPR-Cas9介导的基因组编辑对大肠杆菌进行代谢工程改造。
Metab Eng. 2015 Sep;31:13-21. doi: 10.1016/j.ymben.2015.06.006. Epub 2015 Jun 30.
10
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks.酶功能倡议-酶相似性工具(EFI-EST):一种用于生成蛋白质序列相似性网络的网络工具。
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通过β-还原途径厌氧生产中链脂肪醇。

Anaerobic production of medium-chain fatty alcohols via a β-reduction pathway.

机构信息

Department of Chemical and Biological Engineering, University of Wisconsin-Madison, 3629 Engineering Hall, 1415 Engineering Drive, Madison, WI 53706, United States.

Department of Chemical and Biological Engineering, University of Wisconsin-Madison, 3629 Engineering Hall, 1415 Engineering Drive, Madison, WI 53706, United States; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI 53706, United States.

出版信息

Metab Eng. 2018 Jul;48:63-71. doi: 10.1016/j.ymben.2018.05.011. Epub 2018 May 25.

DOI:10.1016/j.ymben.2018.05.011
PMID:29807110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6072553/
Abstract

In this report, we identify the relevant factors to increase production of medium chain n-alcohols through an expanded view of the reverse β-oxidation pathway. We began by creating a base strain capable of producing medium chain n-alcohols from glucose using a redox-balanced and growth-coupled metabolic engineering strategy. By dividing the heterologous enzymes in the pathway into different modules, we were able to identify and evaluate homologs of each enzyme within the pathway and identify several capable of enhancing medium chain alcohol titers and/or selectivity. In general, the identity of the trans-2-enoyl-CoA reductase (TER) and the direct overexpression of the thiolase (FadA) and β-hydroxy-acyl-CoA reductase (FadB) improved alcohol titer and the identity of the FadBA complex influenced the dominant chain length. Next, we linked the anaerobically induced VHb promoter from Vitreoscilla hemoglobin to each gene to remove the need for chemical inducers and ensure robust expression. The highest performing strain with the autoinduced reverse β-oxidation pathway produced n-alcohols at titers of 1.8 g/L with an apparent molar yield of 0.2 on glucose consumed in rich medium (52% of theoretical yield).

摘要

在本报告中,我们通过扩展反β-氧化途径的视角,确定了增加中链 n-醇产量的相关因素。我们首先创建了一个能够利用氧化还原平衡和生长偶联代谢工程策略从葡萄糖生产中链 n-醇的基础菌株。通过将途径中的异源酶分成不同的模块,我们能够鉴定和评估途径中每个酶的同源物,并鉴定出几种能够提高中链醇产量和/或选择性的酶。一般来说,反式 2-烯酰-CoA 还原酶(TER)的同一性和硫酯酶(FadA)和β-羟基酰基-CoA 还原酶(FadB)的直接过表达提高了醇的产量,而 FadBA 复合物的同一性影响了主导链长。接下来,我们将来自威氏血红蛋白的厌氧诱导 VHb 启动子与每个基因相连,以去除对化学诱导剂的需求并确保稳健表达。具有自动诱导反β-氧化途径的最高效菌株在丰富培养基中以 1.8 g/L 的浓度产生 n-醇,葡萄糖利用率为 0.2 (理论产量的 52%)。